Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0875 ATGGCTGTGCTCATACCTATCTTAGTGGTTACCTTGGTAATCTACAAAAGGAGAAAACAAAGAGAGAATCTCAAAAGATCGATAGAAGAAAGGTTACTTAAATCGAAGAACCGGCAAGTTAGGTACTCTGAGATACTTGTTATCTCAGATAACTTGAAGACAACTATTGGGGAAGGAGGATTTGGAAAAGTGTACTACGGTGCACTGAGTGATAAAACCCAAGTTGCTATCAAGGTTCTGGCTGCATCTTCACGACAAGGCTCCAATGAATTCAGAGCAGAGGCTCAAATATTGACCATTGTTCATCATAGAAATCTGGTTTCCCTCATTGGTTACTGTGATGAGGGTGAGAATAAGGCACTCATTTACGAATTCATGGCTAACGGAAATCTACGCCAGCATCTATCTGATCCAAGCACAAAGGTCTTGAGTTGGATGGAAAGACTACAAATTGCAGTTGATGCAGCACAAGGGTTAGAATATTTACACAATGGTTGCAAGCCACCTATAATACACAGAGATATGAAGACTTCAAATATCTTATTGAATGAAAGAATGCAAGCAAAAATATCAGATTTTGGACTGTCCAGGGTATTCGCTAATGAAAGTGATACTCATTTGTCCACGTGTCCTGCTGGCACTTTTGGATATGTCGACCCTACGATTCATTTATCTGGAAACTTCACCAAGAAAAGTGATGTCTATAGCTTTGGGATCATCTTGTTTGAGTTGGTGACTGGCCAGCCTGCCATAATCAAGGGGTCTGAGTACAACATCCACATCGTGGACTGGGCTAAGCCTTTCATTGAAGAAGGCAATATCCAGAACATTGTGGATCCGAGGTTAGAAGGTTACATGGAAAGTTGTTCTGTTGGAAATTTTGTGTCGTTGGCTCTGTCGTGTACATTGTCAACTGCAGCAGAAAGGCCCGACATAAGCGATGTCGTGTCGCAACTCATTGAATGTCTGAAGATGGTTCAGGACAAAATGCCACAAATACCACAGATGCCACCTAACAACACTGAGAACTTCTCTTATAATTCCATTGGCTCTGAATCATTGCTTACATATATGCCTCAAGGACCAAAAATGGCAGCTTTCTATAAATTCTCACCAATCAATGCAGCCAAAGATAGACCCAAGAGAAAGAGGATGATGATAATGGGAGCATCAGAGCAATCCCCTTTTGGTTTTTTCCTAAGTGCTTTGGCTTTGGCTCTTCTACTTCCTGCTCAAGCTCTAGATCAGTCAGGTTTCATTAGTTTAGATTGTGGATCACCAGACGGTACGAGTTATACCGAAACATCGAATAATATTAGCTATGTTTCTGATGCACCCTACATAAAGAGTGGTGTAAGTGAAAGCATAGGTGCAAGAATTGGACATGGAGGTCCCTATCCAAGGCAATTGAGGACACTCCGAAGCTTTCCTCAAGGAATCAGGAACTGTTACAATGTAAGCATTGTAAAGAGTACCAAATATTTGATTCGAGCGAGTTTCTTGTACGAGAATTACGATGGCCTGAATTTGCCACCGGTGTTTGATCTCTATATTGGGAATAGCTTTTGGGAGACAGTAAACTTCACTGACATATACATGGAACCTTCCATAGATCTCATACATATTACCTCCTCAAATGAAGTCCACATTTGTTTGATCAATACAGGGAATGGAGTACCAATTATTTCATCTTTAGAATTTAGACCTTTACTCAATATCACTTATCAAACTGCGTCGGGATCCTTATCACTTTACTCTCGAGTCAACTTCGGTTCAACCGATTACCAAGAATACAGATTCCCTTTCGATGTTTATGATCGCATTTGGTCGACATTCAACTACTATGGACAAGAAACAGTTAGAACCAGTCCTATAATAGGTACTTTTCAGCACAACAAATACCAAGTGCCATCCATGGTCATGAAAACAGCTTCCACTCTAAAGGAGATTAGGTGGAATACAAAAGATTCATATCAATACTATGTATATATGCACTTTGCTGAGGTTGTTAAGCTTCAACCTAACCAGAGTAGAGTGTTCAATATCACCCACAATGGGAATTTTTTTTATGGACCTCTAATTCCAAGTTACTTGTCCACACTAACTGTTTCCAATGGAAGTCCATTGGATGCAACAAATGAACATTTATTTTCTTTCATTTCGACCGGAAATGCAACGCTTCCTCCCATCATCAATGCTCTCGAGATCTATTATGTGAAAGACGTTTTGGAGTTAGAAGAAAATCAAGGAGATGTTGATGCAATCACCAATATCAAGTCAACTTATGGGATAAAGAGGGATTGGCAAGGAGATCCATGTGTGCCAATGGGATATCCATGGAAGGGATTAAATTGTAGCAATGTAACTGCTCCAAGAATCATATCCTTGAATCTGTCAGCAAGTGGATTGACAGGTGAAATATCTTCTTACATATCAAATCTAACAATGTTGCAAACTCTGGACTTGTCTCACAATGAGTTGACAGGAGAGCTGCCAGAATTCTTAGCAAATTTGCCAAATTTAAGAGTTCTCATTTTAACCAGAAACAAGTTCACAGGCTCAGTTCCTGAGGTTCTCTTGCAAAGGGCTGAAGCTAAATCACTTACATTAAGTGTTGATGAAAATCCAGATCTTTGTACATCATTTAGATGTGATAACAAGAGCAAGAATAACAAGAAGAACAAGTACTTGGTTCTTATAATTCTCTCAAGTGTTATAGCTGTCCTCCTCCCTATCCTAATGGTTACTCTAGTAATCTACAAAAGAAGAAAACAAAGAGATAATTTGAAAACAACAATTGGAGAAGGAGGATTTGGAAAAGTATATTTGGGTGTACTGAGTGATAAAATTCAAGTTGCTATCAAACTGTTGTCTGCATCATCACGGCAAGGCTCTAATGAATTCAAAGCAGAGGCTCAAATACTGACCATTGTTCATCATAGAAATCTGGTTTCTCTCATTGGTTACTGTGATGAGGCTGAGAATAAGGCGCTCATTTATGAATTTATGGCTAATGGAAATCTACGGAAATATCTATCCGATTCAAGCACAGATGTATTGAATTGGACGCAAAGACTCCAAATTGCACTTGATGCAGCACAAGGGCTGGAGTATTTGCACAATTCTTGCAAGCCACCTATAATTCACAGAGATTTGAAGACTTCAAATATCTTATTGAATGAAAGAATGCACGCTAAAATATCAGATTTTGGACTCTCCAGGATATTGGCAAATGAAAATGATACTCATTTGTCCACATGTCCAGCTGGCACCTTTGGATATGTCGACCCGACGATTCATTTGTCAGGAAACTTCACCAAGAAAAGCGATGTTTACAGTTTCGGGATCGTCTTATTTGAGTTGATCACGGGTCAGCCTGCCATAATCAAGGGCTCCGAAATCAACATCCACATAGTGGATTGGGCAAAGCCTCTGATTTTAGAAGGCAACAACCAAAGCATTGTGGATCAAAGATTAGAAGGCTCCATAGAAAGTTGTTCAGCTAGAAAATTTATGGAGCTGGCTTTGTCTTGCACACAGTCAACTTCAGCACAAAGGCCTGAAATGAGTGATGTGGTGAAACAACTCATTGAGTGTCAAGAAATGGCTCTGAACAGAACTGCTCATAGGCCACTTAACAATGAAAACTTTTCATATAATTCAATTGGCTCTGATTCAATTTTAAGTCCTAGATAG 3696 39.53 MAVLIPILVVTLVIYKRRKQRENLKRSIEERLLKSKNRQVRYSEILVISDNLKTTIGEGGFGKVYYGALSDKTQVAIKVLAASSRQGSNEFRAEAQILTIVHHRNLVSLIGYCDEGENKALIYEFMANGNLRQHLSDPSTKVLSWMERLQIAVDAAQGLEYLHNGCKPPIIHRDMKTSNILLNERMQAKISDFGLSRVFANESDTHLSTCPAGTFGYVDPTIHLSGNFTKKSDVYSFGIILFELVTGQPAIIKGSEYNIHIVDWAKPFIEEGNIQNIVDPRLEGYMESCSVGNFVSLALSCTLSTAAERPDISDVVSQLIECLKMVQDKMPQIPQMPPNNTENFSYNSIGSESLLTYMPQGPKMAAFYKFSPINAAKDRPKRKRMMIMGASEQSPFGFFLSALALALLLPAQALDQSGFISLDCGSPDGTSYTETSNNISYVSDAPYIKSGVSESIGARIGHGGPYPRQLRTLRSFPQGIRNCYNVSIVKSTKYLIRASFLYENYDGLNLPPVFDLYIGNSFWETVNFTDIYMEPSIDLIHITSSNEVHICLINTGNGVPIISSLEFRPLLNITYQTASGSLSLYSRVNFGSTDYQEYRFPFDVYDRIWSTFNYYGQETVRTSPIIGTFQHNKYQVPSMVMKTASTLKEIRWNTKDSYQYYVYMHFAEVVKLQPNQSRVFNITHNGNFFYGPLIPSYLSTLTVSNGSPLDATNEHLFSFISTGNATLPPIINALEIYYVKDVLELEENQGDVDAITNIKSTYGIKRDWQGDPCVPMGYPWKGLNCSNVTAPRIISLNLSASGLTGEISSYISNLTMLQTLDLSHNELTGELPEFLANLPNLRVLILTRNKFTGSVPEVLLQRAEAKSLTLSVDENPDLCTSFRCDNKSKNNKKNKYLVLIILSSVIAVLLPILMVTLVIYKRRKQRDNLKTTIGEGGFGKVYLGVLSDKIQVAIKLLSASSRQGSNEFKAEAQILTIVHHRNLVSLIGYCDEAENKALIYEFMANGNLRKYLSDSSTDVLNWTQRLQIALDAAQGLEYLHNSCKPPIIHRDLKTSNILLNERMHAKISDFGLSRILANENDTHLSTCPAGTFGYVDPTIHLSGNFTKKSDVYSFGIVLFELITGQPAIIKGSEINIHIVDWAKPLILEGNNQSIVDQRLEGSIESCSARKFMELALSCTQSTSAQRPEMSDVVKQLIECQEMALNRTAHRPLNNENFSYNSIGSDSILSPR 1231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15154924 15169292 + Maker00026376 Lcy13g0875 651180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0875 1231 PANTHER OS07G0107800 PROTEIN-RELATED 415 1204 - -
Lcy13g0875 1231 Pfam Malectin-like domain 422 739 IPR024788 -
Lcy13g0875 1231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0875 1231 Gene3D - 583 738 - -
Lcy13g0875 1231 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 1003 1209 - -
Lcy13g0875 1231 ProSitePatterns Protein kinases ATP-binding region signature. 933 955 IPR017441 GO:0005524(InterPro)
Lcy13g0875 1231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1047 1059 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0875 1231 SUPERFAMILY Protein kinase-like (PK-like) 911 1196 IPR011009 -
Lcy13g0875 1231 ProSiteProfiles Protein kinase domain profile. 927 1204 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0875 1231 FunFam Leucine-rich repeat receptor-like kinase 750 881 - -
Lcy13g0875 1231 CDD STKc_IRAK 933 1198 - -
Lcy13g0875 1231 Pfam Leucine Rich Repeat 817 838 IPR001611 GO:0005515(InterPro)
Lcy13g0875 1231 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 126 331 - -
Lcy13g0875 1231 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524(InterPro)
Lcy13g0875 1231 SUPERFAMILY L domain-like 775 871 - -
Lcy13g0875 1231 FunFam receptor-like protein kinase FERONIA 15 125 - -
Lcy13g0875 1231 SUPERFAMILY Protein kinase-like (PK-like) 36 319 IPR011009 -
Lcy13g0875 1231 Gene3D Phosphorylase Kinase; domain 1 933 1003 - -
Lcy13g0875 1231 Gene3D Phosphorylase Kinase; domain 1 56 126 - -
Lcy13g0875 1231 FunFam receptor-like protein kinase FERONIA 903 1002 - -
Lcy13g0875 1231 CDD STKc_IRAK 56 321 - -
Lcy13g0875 1231 Pfam Protein tyrosine and serine/threonine kinase 52 318 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0875 1231 Pfam Protein tyrosine and serine/threonine kinase 929 1196 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0875 1231 ProSiteProfiles Protein kinase domain profile. 50 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0875 1231 Gene3D Transferase(Phosphotransferase) domain 1 1004 1220 - -
Lcy13g0875 1231 Gene3D Transferase(Phosphotransferase) domain 1 127 336 - -
Lcy13g0875 1231 ProSiteProfiles Leucine-rich repeat profile. 816 839 IPR001611 GO:0005515(InterPro)
Lcy13g0875 1231 SMART serkin_6 50 326 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0875 1231 SMART serkin_6 927 1203 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0875 1231 Gene3D Ribonuclease Inhibitor 752 875 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1449 Lcy-Chr12:33002333 Lcy13g0875 Lcy-Chr13:15154924 1.11E-53 dispersed
Lcy13g0875 Lcy-Chr13:15154924 Lcy3g2169 Lcy-Chr3:48579733 0 dispersed
Lcy13g0875 Lcy-Chr13:15154924 Lcy13g0877 Lcy-Chr13:15181592 1.31E-135 proximal
Lcy13g0874 Lcy-Chr13:15139592 Lcy13g0875 Lcy-Chr13:15154924 4.57E-308 tandem
Lcy13g0875 Lcy-Chr13:15154924 Lcy13g0876 Lcy-Chr13:15170190 2.07E-153 tandem
Lcy3g1453 Lcy-Chr3:41283630 Lcy13g0875 Lcy-Chr13:15154924 8.90E-42 transposed
Lcy5g1596 Lcy-Chr5:37572787 Lcy13g0875 Lcy-Chr13:15154924 5.71E-20 transposed
Lcy10g0222 Lcy-Chr10:3512089 Lcy13g0875 Lcy-Chr13:15154924 6.01E-27 wgd
Lcy13g0875 Lcy-Chr13:15154924 Lcy3g0241 Lcy-Chr3:7429876 1.75E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65566 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0875 - - - 0.0