Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0877 ATGGGATATCCCTGGAGTGGATTAAATTGTAGCTATGGAACTGCTCCAAGAATTATATCATTGAACCTTTCTACAAGTGGACTGACTGGTAAAATATCTTCCTACCTATCAAATTTAACAATGTTACAAACTTTGGATTTGTCCAATAATGAGTTGACTGGAGAGCTGCCGGAATTTTTAGTAAATTTGCCAAATTTAAGAATCCTTTATTTAACCGGAAACAGGTTCACGGGCTTAATTCCTAAGGCTCTCTTGCAAAGGGCTGAAGCTGGATTACTTACATTAAGTGTGGGTGAAAATCCAGATCTTTGTACATCACTTAAATGTGATAGCAAGAGGAAGAATGACAAAAGGAAGTACTTGGCTCTTATAATTCTCTTCAGTATAATAGCCGTGCTCCTACCTATCCTTGTGGTTACTCTGGTAATCTACAAAAGGAGAAAACAAAGAGAGAATCTCAAAAGATCAATTCAAGAAAGGTTACTTAAGTCGAAGAACCAACAGGTTCGCTACTCTGAAATACTGGTTATCACAGATAACTTGAAGACAACTATTGGGGAAGGAGGTTTTGGAAAGGTATACTTGGGTGTACATAGTGATAGAACCCAAGTTGCTGTCAAGTTGCTTTCTACGACGTCACAGCAAGGCCACAATGAATTCAGAGCCGAGGCTCAAATATTAACAGTTGTTCATCATAGAAATCTGGTCTCTCTCGTTGGTTACTGTGATGAGGCTGAGAATAAGGCACTCATTTATGAATTCATGGGTAACGGAAATTTACGCAATCATCTATCTGATTCAAGCACAAAGGTGTTGAGTTGGATGGAAAGACTCCAAATTGCAATTGATGCAGCACAAGGGTTGGAATATTTACACAATGGTTGCATGCCACCTATCATTCACAGAGATATGAAGTCTTCTAATATCCTATTGAATGATAAAATGCAAGCTAAAATATCTGATTTTGGACTATCCAGGGTATTTGCAAATGAAAATGATACACATTTCTCCACATGTCCTGCTGGCACCTTTGGATATGTCGACCCAACGTAA 1053 38.37 MGYPWSGLNCSYGTAPRIISLNLSTSGLTGKISSYLSNLTMLQTLDLSNNELTGELPEFLVNLPNLRILYLTGNRFTGLIPKALLQRAEAGLLTLSVGENPDLCTSLKCDSKRKNDKRKYLALIILFSIIAVLLPILVVTLVIYKRRKQRENLKRSIQERLLKSKNQQVRYSEILVITDNLKTTIGEGGFGKVYLGVHSDRTQVAVKLLSTTSQQGHNEFRAEAQILTVVHHRNLVSLVGYCDEAENKALIYEFMGNGNLRNHLSDSSTKVLSWMERLQIAIDAAQGLEYLHNGCMPPIIHRDMKSSNILLNDKMQAKISDFGLSRVFANENDTHFSTCPAGTFGYVDPT 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15181592 15183848 + Maker00026422 Lcy13g0877 651182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0877 350 PANTHER OS07G0107800 PROTEIN-RELATED 3 349 - -
Lcy13g0877 350 SUPERFAMILY L domain-like 2 100 - -
Lcy13g0877 350 SMART serkin_6 179 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0877 350 ProSitePatterns Protein kinases ATP-binding region signature. 185 207 IPR017441 GO:0005524(InterPro)
Lcy13g0877 350 ProSiteProfiles Protein kinase domain profile. 179 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0877 350 FunFam Os07g0541700 protein 255 343 - -
Lcy13g0877 350 Gene3D Ribonuclease Inhibitor 3 92 IPR032675 -
Lcy13g0877 350 Pfam Leucine Rich repeats (2 copies) 41 77 IPR025875 -
Lcy13g0877 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0877 350 Gene3D Phosphorylase Kinase; domain 1 185 255 - -
Lcy13g0877 350 Gene3D Transferase(Phosphotransferase) domain 1 256 350 - -
Lcy13g0877 350 FunFam receptor-like protein kinase FERONIA 144 254 - -
Lcy13g0877 350 FunFam Leucine-rich repeat receptor-like kinase 2 106 - -
Lcy13g0877 350 SUPERFAMILY Protein kinase-like (PK-like) 161 349 IPR011009 -
Lcy13g0877 350 Pfam Protein tyrosine and serine/threonine kinase 181 334 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0877 Lcy-Chr13:15181592 Lcy3g2168 Lcy-Chr3:48573612 3.18E-200 dispersed
Lcy13g0875 Lcy-Chr13:15154924 Lcy13g0877 Lcy-Chr13:15181592 1.31E-135 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65567 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0877 - - - 0.0