Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0883 ATGGGTTTTCTCAACCCCTTCCTCTCTCTCTCCACTCTCCTCCTCCTCCTCCTCCTCTCCCCTGCCGCCGCCGACGACGCCGCCGTCATCCAAAAGCTCGCCGCCGCCGTCTCCCCCACCCCCTCCGGCTGGTCCTCCAATACTCCCTTCTGCAACTGGAAAGAAATCCGCTGCGACTCCTCAAACCGAGTCACCTCCATTAACTTAGCCTCCAAATCCCTCTCCGGCGTCCTCCCTTCCGATCTCAACTCCCTCTCTCAGCTCACTTCCCTCTCCCTTCAACGCAACTCCTTCACCGGCCCAATCCCTTCCTTCGCCAATCTCTCTTTCCTCCAATCTCTATATCTCGACAACAACAATTTCTCCTCTGTTCCTCCTGGTGCCTTCCAAGGCCTCACCAGCTTGCAGATTTTGAGCCTAACCCAGAATGTTAATCTTGCTCCTTGGTCGATTCCGACTGAGTTGACTCAGGCTTCCAGTTTAGTTAGCTTTTATGCTGGAAATGCCAACATTGTTGGGTCTTTGCCCGATTTCTTCGATTCCTTCTCTAGTTTGCAGGAGCTTCGTCTTTCTTACAACAATCTTACTGGGGTTTTGCCCAAATCTCTCGGTGGATCTGGGATTAAGAGCTTGTGGTTGAACAATCAGGCAATCGGGTTGTCGAGTTCTATTGATTTGTTGTCGTCTATGACTCAACTGACTCAGGTTTGGCTTCAGAAGAATCAATTTACTGGCCAGATTCCGGACCTCTCCAAGTGTGAGGGTTTGTTTGATCTTCAGCTTCGTGATAATCAGTTTACTGGGGTTGTTCCTCCGTCGCTTATGCAGCTTTCTAGCTTGTTGAATGTTAGTTTGGATAACAATAAGCTTCAGGGGCCATTGCCTGTGTTTGATTCGAGAGTACAGGCGACTTTTAGTAGTGTGAATAGGTTTTGTAGGGCGACACCGGGGCCGTGTGATGCTCAGGTTTCGGTTCTTCTGGCGGTTGCGGGGGGGTTCGGGTACCCGATTTTGCTGGCCGATGCTTGGGAAGGGAATGCTGCTTGCACGGATTGGAGCTTTGTGGTTTGTACAGAAGGGAAGGTTACTAGTGTTAACTTAGGGAAGCAGCATTTGGTGGGGATCATCTCTCCTGCATTTGCTAATTTGACGAGTTTGAAGAGTTTGTATTTGAATGATAATAATTTGACGGGTGAGATACCAGAGAGTTTGACGACATTGGCGCAGCTTCAGAATCTCGATGTTTCAAACAACAATTTGAGCGGGCAGATACCGAAGTTTGCGGCATCGGTTAAGTTGAACACGAAGGGTAATCCTTTGATTGGGACTAGTTTGAGCCCTGGAGATGGAGGACATGATGGTGGAGCTGGGAGTGGGAAGATTGATACCAATGGCACCACCATTGATAGGAGTTCCGGATCTCCCAATGGATCTTCTGTTTCAGCTGGTGTGATTGTTGGTGTTGTTATTGCTGTTGTTGTTTTTGTTGCTGTGTTGCTGTTTGTTGTCTTCAAATGTTATGTTAGCAATAGGCACAAGAAGTTTGGGAAAGTGAACAATCCTGAGAATGGTAAGGAGATTGTGAAGAGTGATGCAGGGAGTGGCTTGAATGGTTATGCTGGAGTTCCAAGTGAGATGCAGAGCCAGAGCAGTGAGGATTTTAGCAATGATATTCATGTTTTCGAGGGCGGAAATGTGGCGATCTCGATACAAGTTCTAAGGCAGGTGACGAACAATTTTAGTGAGGATAATGTGTTGGGTAGAGGAGGATTTGGAGTTGTTTACAAAGGAGAGTTGCATGATGGTACTAAAATTGCTGTGAAAAGGATGGAATCTGGAGCAATGGGCACCAAAGGAATGAATGAGTTTCAAGCTGAAATTGCTGTGCTTACTAAAGTTAGGCACAGACATTTGGTTGCTCTTTTGGGTTACTGTATCAATGGCAATGAGAGGTTGTTGGTGTATGAGTACATGCCTCAAGGGACATTGACTCAACATTTGTTTGATTGGCAAGAGAATGGTTATCCTCCTCTTACATGGAAACAAAGAATTACAATAGCATTGGATGTGGCTAGAGGAGTAGAATATCTTCACAGCTTAGCTCAACAAAGTTTCATTCACAGAGATTTGAAGCCTTCTAATATACTTCTTGGTGATGACATGAGGGCTAAGGTTGCTGATTTTGGTTTGGTTAGAAATGCACCCGACGGAAAATACTCCGTCGAGACTCGATTGGCTGGAACGTTTGGCTATCTTGCTCCTGAATATGCAGCAACTGGAAGAGTGACAACAAAAGTGGATGTATATGCATTTGGAGTAGTTTTGATGGAAATCATCACGGGTCGAAAAGCTTTGGACGACACGGTGCCGGACGAGCGATCTCATCTGGTGACATGGTTCCGCAGGGTGTTGATCAACAAAGAAAACATCCCAAAGGCGATGGATCAAAGTCTGAAGCCAGACGAGGAGACGATGGAGAGCATATACAAGGTGGCGGAGTTGGCAGGACATTGTACAGCTCGTGAGCCACACCAGAGACCCGACATGGGGCACGCTGTGAACATCTTGGGCCCTCTGGTGGAGCAATGGAAGCCTACGAGCCAACACGAAGACGAAACATACGGGATCGATATGCACATGAGCCTACCTCAGGCTCTTCAAAGATGGCAAGCCAATGAAGGAACATCAACAATGTTCAATGACATTTCTTACTCCCAGACTCACACCAGCATCCCTTCCAAACCTTCAGGATTTGCAGACACGTTTGACTCCATGGATTGCAGATGA 2787 47.18 MGFLNPFLSLSTLLLLLLLSPAAADDAAVIQKLAAAVSPTPSGWSSNTPFCNWKEIRCDSSNRVTSINLASKSLSGVLPSDLNSLSQLTSLSLQRNSFTGPIPSFANLSFLQSLYLDNNNFSSVPPGAFQGLTSLQILSLTQNVNLAPWSIPTELTQASSLVSFYAGNANIVGSLPDFFDSFSSLQELRLSYNNLTGVLPKSLGGSGIKSLWLNNQAIGLSSSIDLLSSMTQLTQVWLQKNQFTGQIPDLSKCEGLFDLQLRDNQFTGVVPPSLMQLSSLLNVSLDNNKLQGPLPVFDSRVQATFSSVNRFCRATPGPCDAQVSVLLAVAGGFGYPILLADAWEGNAACTDWSFVVCTEGKVTSVNLGKQHLVGIISPAFANLTSLKSLYLNDNNLTGEIPESLTTLAQLQNLDVSNNNLSGQIPKFAASVKLNTKGNPLIGTSLSPGDGGHDGGAGSGKIDTNGTTIDRSSGSPNGSSVSAGVIVGVVIAVVVFVAVLLFVVFKCYVSNRHKKFGKVNNPENGKEIVKSDAGSGLNGYAGVPSEMQSQSSEDFSNDIHVFEGGNVAISIQVLRQVTNNFSEDNVLGRGGFGVVYKGELHDGTKIAVKRMESGAMGTKGMNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWQENGYPPLTWKQRITIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEIITGRKALDDTVPDERSHLVTWFRRVLINKENIPKAMDQSLKPDEETMESIYKVAELAGHCTAREPHQRPDMGHAVNILGPLVEQWKPTSQHEDETYGIDMHMSLPQALQRWQANEGTSTMFNDISYSQTHTSIPSKPSGFADTFDSMDCR 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15333608 15337293 - Maker00026353 Lcy13g0883 651188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0883 928 PANTHER OSJNBA0070M12.3 PROTEIN 8 928 IPR052422 -
Lcy13g0883 928 MobiDBLite consensus disorder prediction 460 478 - -
Lcy13g0883 928 Gene3D Ribonuclease Inhibitor 321 445 IPR032675 -
Lcy13g0883 928 Gene3D Ribonuclease Inhibitor 24 317 IPR032675 -
Lcy13g0883 928 ProSitePatterns Protein kinases ATP-binding region signature. 586 608 IPR017441 GO:0005524(InterPro)
Lcy13g0883 928 Gene3D Phosphorylase Kinase; domain 1 541 657 - -
Lcy13g0883 928 FunFam Receptor-like kinase TMK4 24 317 - -
Lcy13g0883 928 ProSiteProfiles Protein kinase domain profile. 580 860 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0883 928 SUPERFAMILY Protein kinase-like (PK-like) 569 889 IPR011009 -
Lcy13g0883 928 Pfam Leucine rich repeat 362 420 IPR001611 GO:0005515(InterPro)
Lcy13g0883 928 Pfam Leucine rich repeat 104 143 IPR001611 GO:0005515(InterPro)
Lcy13g0883 928 SMART serkin_6 580 864 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0883 928 FunFam receptor protein kinase TMK1 541 657 - -
Lcy13g0883 928 Pfam Leucine Rich Repeat 184 205 IPR001611 GO:0005515(InterPro)
Lcy13g0883 928 CDD STKc_IRAK 586 859 - -
Lcy13g0883 928 Pfam Leucine rich repeat N-terminal domain 24 59 IPR013210 -
Lcy13g0883 928 Pfam Leucine rich repeat N-terminal domain 321 358 IPR013210 -
Lcy13g0883 928 Gene3D Transferase(Phosphotransferase) domain 1 658 881 - -
Lcy13g0883 928 SMART LRR_typ_2 85 107 IPR003591 -
Lcy13g0883 928 SMART LRR_typ_2 383 407 IPR003591 -
Lcy13g0883 928 SMART LRR_typ_2 108 131 IPR003591 -
Lcy13g0883 928 SMART LRR_typ_2 182 205 IPR003591 -
Lcy13g0883 928 Pfam Protein tyrosine and serine/threonine kinase 583 853 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0883 928 MobiDBLite consensus disorder prediction 907 928 - -
Lcy13g0883 928 SUPERFAMILY L domain-like 47 433 - -
Lcy13g0883 928 FunFam Leucine-rich repeat receptor-like kinase 321 444 - -
Lcy13g0883 928 ProSiteProfiles Leucine-rich repeat profile. 110 131 IPR001611 GO:0005515(InterPro)
Lcy13g0883 928 FunFam receptor protein kinase TMK1 658 875 - -
Lcy13g0883 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0883 928 MobiDBLite consensus disorder prediction 442 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0883 K00924 - - csv:101213513 1619.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0883 Lcy-Chr13:15333608 Lcy5g0491 Lcy-Chr5:5243815 4.62E-195 dispersed
Lcy10g1118 Lcy-Chr10:33534488 Lcy13g0883 Lcy-Chr13:15333608 1.85E-269 transposed
Lcy10g1595 Lcy-Chr10:40390870 Lcy13g0883 Lcy-Chr13:15333608 2.04E-185 transposed
Lcy10g1596 Lcy-Chr10:40393471 Lcy13g0883 Lcy-Chr13:15333608 6.45E-64 transposed
Lcy1g2643 Lcy-Chr1:49760680 Lcy13g0883 Lcy-Chr13:15333608 1.74E-109 wgd
Lcy1g2694 Lcy-Chr1:51678134 Lcy13g0883 Lcy-Chr13:15333608 1.17E-110 wgd
Lcy13g0883 Lcy-Chr13:15333608 Lcy6g1411 Lcy-Chr6:20994050 1.35E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1059 . Blo12g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0538 Cone15ag0562 Cone18ag0903 . . . . . . Blo07g00197 . . . . . Bma06g01485 . . . Cma08g00873 . . . . . Bhi12g02115 . . . . . Lcy13g0883 . . . . . . . Lsi09g01615 . . Cme11g02213
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65568 None None None None Lcy PK