Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0890 ATGGAGAACACAGCAGCCCACCGTCGCCGTGTTCTGTTGGTGACATACTGTGCTCAAGGACACATCAACCCAGCCCTCCAATTCGCCAAGCGCCTCACGCGCCGCCTCATCGATGTCACCTTCCTCACTTCTCTCTCCGCCTACCGTCGTATGGGCAAAACCCCGACGCTCCCACATCTCTCCTTCGCCTCCTTCTCCGACGGCTATGACGACGGTTTCAAACAGGGAGACGACATCAATCATTTTATGTCGGAGCTCGAGCGCCGTGGATCTCAAGCTATTAAGGATATGGTTATGGCCAGCGCCGACCAAGGCCAACCCTTCACTTGGGTGGTGTATTCCATTCTCCTCCCATGGGTGGCTACGGTGGCGCGTTTCCTCCACCTTCCATCGGTTCTTCTTTGGATTCAACCGGCTATTGTTTTTGCTTTGTACTACTATTACAACAATGGTTACCACGACGCAATTAAGAGCATGTTCAGTGATTCCTCGGCGAGTATTCAGCTTCCTGGGCTTCCATTGTTGACTGCTCGTGACCTTCCATCGTTCTTTGGTTCTTCTGACGTTTATGATTTTGCCCTCCCAATATTCCGGAGGCAAATTGAATTGCTCGAGCAAGAGCCCAACCCAAAGGTTCTAGTCAACACGTTCGATGAATTGGAGCACGATGCGTTGAGAGCAATTAACAAGTTCCATTTGATGCCCATCGGACCTCTGATTCCCTCTGCTTTTCTTGATGGAAAAGACCCATCAGAAGCCTCTTCTGGATGCGATCTATTCCGATCTACTAGCAGTTATATGGAGTGGTTGAACTCGAAACCCAAAGGATCGGTGGTTTACGTATCGTCGGGAAGCATTTCGACATTATCAAAGGAAGAGAAAGAGGAGATAGCAAGAGGGTTATTGAGCTCCGGACGGCCATTTTTGTGGGTGATGCGAGACGTGGAAGAAAAAGATGCGTTGAGCTGTAGGGAGGAAGTGGAAGTTGAAGGGAAGATAGTTCCATGGTGTTCACAGCTAGAGGTTCTGTCGAGTCCGGCAACGGGATGTTTTCTAACACATTGTGGTTGGAATTCTTGTTTGGAGAGTTTGGTTTGCGGGGTTCCGACTGTGGCGTTTCCGCAATGGACGGATCAAGGGACGAATGCGAAGATCATTCGGGACTTGTCGGAGACGGGAGTGAGGTTGGAGGTGGACGTGGACGGCGTGGTTAAGCGAGATGAGATAAAAAGGTGCTTGGAGTTGGTGATGGGAGATTCTAAGAGAGGGGAAGAGATAAGGAGAAATGCTGCCAAATGGAAGGAGTTGGCCAAGGAAGCTGCTACCGATCATGGTTCCTCAGATGCCAACTTCAAGGCCTTCGTCCATCAAGTTTGTTCTTGA 1383 50.11 MENTAAHRRRVLLVTYCAQGHINPALQFAKRLTRRLIDVTFLTSLSAYRRMGKTPTLPHLSFASFSDGYDDGFKQGDDINHFMSELERRGSQAIKDMVMASADQGQPFTWVVYSILLPWVATVARFLHLPSVLLWIQPAIVFALYYYYNNGYHDAIKSMFSDSSASIQLPGLPLLTARDLPSFFGSSDVYDFALPIFRRQIELLEQEPNPKVLVNTFDELEHDALRAINKFHLMPIGPLIPSAFLDGKDPSEASSGCDLFRSTSSYMEWLNSKPKGSVVYVSSGSISTLSKEEKEEIARGLLSSGRPFLWVMRDVEEKDALSCREEVEVEGKIVPWCSQLEVLSSPATGCFLTHCGWNSCLESLVCGVPTVAFPQWTDQGTNAKIIRDLSETGVRLEVDVDGVVKRDEIKRCLELVMGDSKRGEEIRRNAAKWKELAKEAATDHGSSDANFKAFVHQVCS 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15691039 15692798 - Maker00026349 Lcy13g0890 651195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0890 460 Gene3D Glycogen Phosphorylase B; 14 451 - -
Lcy13g0890 460 CDD GT1_Gtf-like 10 444 IPR002213 GO:0008194(InterPro)
Lcy13g0890 460 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 459 - -
Lcy13g0890 460 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 268 422 IPR002213 GO:0008194(InterPro)
Lcy13g0890 460 ProSitePatterns UDP-glycosyltransferases signature. 336 379 IPR035595 -
Lcy13g0890 460 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 11 451 - GO:0080043(PANTHER)|GO:0080044(PANTHER)
Lcy13g0890 460 Gene3D Glycogen Phosphorylase B; 254 439 - -
Lcy13g0890 460 FunFam Glycosyltransferase 14 256 - -
Lcy13g0890 460 FunFam Glycosyltransferase 257 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0890 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0819 Lcy-Chr13:13363675 Lcy13g0890 Lcy-Chr13:15691039 1.57E-173 dispersed
Lcy13g0824 Lcy-Chr13:13732306 Lcy13g0890 Lcy-Chr13:15691039 2.61E-174 dispersed
Lcy13g0890 Lcy-Chr13:15691039 Lcy13g0893 Lcy-Chr13:15740609 2.46E-140 dispersed
Lcy13g0890 Lcy-Chr13:15691039 Lcy13g0892 Lcy-Chr13:15714389 2.07E-141 proximal
Lcy11g1279 Lcy-Chr11:36094577 Lcy13g0890 Lcy-Chr13:15691039 1.92E-122 transposed
Lcy10g0857 Lcy-Chr10:26690002 Lcy13g0890 Lcy-Chr13:15691039 1.16E-58 wgd
Lcy13g0818 Lcy-Chr13:13282283 Lcy13g0890 Lcy-Chr13:15691039 4.91E-175 wgd
Lcy13g0890 Lcy-Chr13:15691039 Lcy2g2190 Lcy-Chr2:44747436 1.56E-80 wgd
Lcy13g0890 Lcy-Chr13:15691039 Lcy3g0575 Lcy-Chr3:21662781 1.36E-62 wgd
Lcy13g0890 Lcy-Chr13:15691039 Lcy8g0876 Lcy-Chr8:31551880 1.12E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1057 . . . . . . . . Cmo08g00840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00859 . . . . . . . . . . . Cma08g00870 . . . . . Bhi12g02118 . . . . . Lcy13g0890 . . . . . . . Lsi09g01617 . . Cme11g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002292 1 2 2 2 2 2 0 2 2 1 2 2 2 1 2 4 2 8 2 2 1 3 1 1 1 2 1 1 1 8 63