Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0893 ATGAGAAATCATCATTTTCTCTTCGTATGTTTCCCTGTTTTAGGTCACATAAACCCTTCTCTTCAACTTGCCAAGCGACTTACCAGTTTTGGCCTCGATGTCACCTTCGCCACCACCGTCGGTGCCGCTCGTCGCTTGAACCAAACCCATCAAACTTCAACAACACAGGGCACTCTTTCTTTTGCCACTTTCTCCGATGGCTCTGACGACAAAAACATCCAACAACTCAACCAAGATGTCAGCCACTACTTCTCTCGGCTCAAGCACTTTGGCTCTCAATCTCTAAACGAACTCATTGCTTCTCTCGCAAACAAAGGCCGTCCCATTACTTTCCTAATCTACAGCCCTTTGCTCACTTGGGCGGCCGATGTTGCCACTGCGTTCGGTATTCCCTCAGCTCTTTTCTTCGTTCAGTCTGCAATAATCTTAACTTTGTATTATCATTACGTGAATGGTTACGGCGATGCAATCGACAACAAACTCCAAGACCCGTCCTCGTACATAGAATTACCAGGTTTGCCATTGCTTACGAGTCGGGACATGCCCTGTTTCTTCTCCCCTTCAAGCCCTCTCGCTTTCATTCTCCCTCCAGTGAAAGAGCAGATCGAATTCCTCAATCGACAAACTCGGCCAACAGTGCTAGTCAACACCTTCGATGCGTTGGAGAATGAAGCCTTGAGAGCTATGGACGACAAGTTCAAAATCTTGGCGGTTGGACCTGTGATTCCATTTGGTGACGATGTTGCTATCTCTCAAGGCTCATCGGAGGACGACGATTGTGTCGAATGGCTGAACTCGAAGCCTGAGTCGTCGGTCGTTTACGTTTCGTTCGGATCGATGTGCGTGTTGTCGGAGCAACAAGAGGATGAAATCATGCATGCCTTGTTGGAGAGCGGGCACGTGTTCTTGTGGGTAATGAGGTCCAAGGAGGAGAAAGATGGGGAGAAGTTGAAGAGGTTGGAAGAGAAAGGGAAAATCGTGTCGTGGTGTCGACAAATGGAAGTGTTGAATCATGGTTCGTTGGGTTGTTTTATGACACACTGCGGTTGGAATTCGACTGTTGAAAGCTTGGCTCATGGGTTGCCAGTGGTCGCTTTCCCACAGCAGACGGATCAAATCACGAATGCGAAGCTGATAGAAGATGTGTGGAAGACGGGAGTGAAGGTGGAGGCGGATAATGGAGAAGGGATCGTTAAGAGGGAAGAAATTAGAAGGTGTTTGGATATTGTGATGGGAGGGCGAAAGAAAGAGATAGAGGAAAATGTCCAGAAGTGGAAAGTTTTGGCCAAAGAGGCTATTGATGAAGGTGGGTCGTCCTACTTGAATCTCAAGACTTTTATTGACGGGATTGATGATGTAGCTTAG 1365 47.55 MRNHHFLFVCFPVLGHINPSLQLAKRLTSFGLDVTFATTVGAARRLNQTHQTSTTQGTLSFATFSDGSDDKNIQQLNQDVSHYFSRLKHFGSQSLNELIASLANKGRPITFLIYSPLLTWAADVATAFGIPSALFFVQSAIILTLYYHYVNGYGDAIDNKLQDPSSYIELPGLPLLTSRDMPCFFSPSSPLAFILPPVKEQIEFLNRQTRPTVLVNTFDALENEALRAMDDKFKILAVGPVIPFGDDVAISQGSSEDDDCVEWLNSKPESSVVYVSFGSMCVLSEQQEDEIMHALLESGHVFLWVMRSKEEKDGEKLKRLEEKGKIVSWCRQMEVLNHGSLGCFMTHCGWNSTVESLAHGLPVVAFPQQTDQITNAKLIEDVWKTGVKVEADNGEGIVKREEIRRCLDIVMGGRKKEIEENVQKWKVLAKEAIDEGGSSYLNLKTFIDGIDDVA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15740609 15741973 + Maker00026330 Lcy13g0893 651198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0893 454 Gene3D Glycogen Phosphorylase B; 9 443 - -
Lcy13g0893 454 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 448 - -
Lcy13g0893 454 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 244 390 IPR002213 GO:0008194(InterPro)
Lcy13g0893 454 ProSitePatterns UDP-glycosyltransferases signature. 329 372 IPR035595 -
Lcy13g0893 454 CDD GT1_Gtf-like 5 442 IPR002213 GO:0008194(InterPro)
Lcy13g0893 454 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 5 442 - GO:0080043(PANTHER)|GO:0080044(PANTHER)
Lcy13g0893 454 Coils Coil 415 435 - -
Lcy13g0893 454 Gene3D Glycogen Phosphorylase B; 249 431 - -
Lcy13g0893 454 FunFam Glycosyltransferase 247 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0893 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0890 Lcy-Chr13:15691039 Lcy13g0893 Lcy-Chr13:15740609 2.46E-140 dispersed
Lcy13g0893 Lcy-Chr13:15740609 Lcy4g0169 Lcy-Chr4:2181203 1.41E-93 dispersed
Lcy13g0893 Lcy-Chr13:15740609 Lcy13g0895 Lcy-Chr13:15760465 8.93E-181 proximal
Lcy13g0892 Lcy-Chr13:15714389 Lcy13g0893 Lcy-Chr13:15740609 1.00E-208 tandem
Lcy13g0893 Lcy-Chr13:15740609 Lcy3g0714 Lcy-Chr3:26072929 4.80E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1044 . . . . . Bpe14g01052 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g02120 . . . . . Lcy13g0893 . . . . . . . . . . Cme11g02217