Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0900 ATGGAATCAAAGCATGGTGCTATCGCTTCCAAACGCTCCTCCATTGTTCATCAACCTCAAGCTCTTCAAGCTGGATTCCTCCACTTACCTCGCAAAAAACCTAAGAGGCTGCCGCAGTCGGATGGACTTGCTTCGAAAGATGGGGATAAGGTTTCGTATTATGTTGCGAAGGATCTGCGTATCAAGCGAGTTTTCTCTCCCAATTTGGAAAATCGCTCCTCGGTGCCATCGGGAGAGAAGATCAGCGACAAAGAACGGCCGATAACCGCGAATGGAACCTGTCCGATTGGAGATAGTGGAGTCGGTAAAAGTACCGAGGCTGCAGAGGTACGGAATGAGAGTTTTCGCAATTCTAATGGGTATGTTGAATTGGGCGATGAGGATCGAAGATGTAATGGGAAGAGCGAGCAGCTGGTGCATTCTACACCTCCTGATGCGGAGATTCTGGCTGGGGGCTTTGTGGCGGCTTCTTCTAATGGATGTCCTCGATCAAGTAATGGAGGCGTTTTAGGGGATACTTGTGCGAAAGCTGACTGTAGAATTGACTCTGTTACTAGAATCGGATCGGTGCTCAAACCATGTTCTAAAAGGAAGCTATTCAAAGCACCTGGCTCCATTGCCTACAAAAGATTGCTACCTTTTTTGCTGGATAGCGATAATTACACCCTACAAGGTGATTCGTGCTCAAAACGTGAAAACAATTTGGAGAAGAAGGCAAATATTGAATCTAATCTGTGTAATCATGCCAAGGAGTCATCTTTTGTTGATTTAGATGCTAGTGTAAAGATTGCAGTTTTGGCCTCCGGTATGTCATGCAACACTAGGGAGCTAAATTTGCCACCTCCAGATAATGGAGATACTAAAAATTTTCAGAATGGCAGTGATTCAAAGAATGACCTGACTTCAGTCAAAGAGGGTTCTGGTTTGGAAAAAGATAACGTAGTTTGTGCCTCTTCTCTTGACAAAAGGCTGACAGAGAATGGAGGGGCCACAAAGCATCAGATTGAGGATTGTTCTTCTAAAGAACAATCCAAAACCTCTGGAACGGAGAGGCCTGGTGGTGGAAATTTTTTTATATCTTCGAGTATATCATCAGAAGTAGACAACTCTGAGGTCCATGTTTCAAAGAAGTTGTGTAACAATGTCTCTGAGGATATCAAAAGAGAATATCATTTCAACGAAGAACTCAAGATGCCATCGTTGGATTCTGAAGTTGCTTCTAACCCAGTGAAGGAAGATAGGAGGAATGAAAAAGTGGAATGTACTCGAGGCACAGATCAAAATCTTGGTAGTGCTACTGTTGGTGAAAATCATTGCAACATTGCTGCAGAGTGTGACAAGAAATATGGCCCCTGTGTTAGAAACAAAGTGGTTCGCAATCCACTTGTACAACTGAAGTCGAAGTACAGCCAAGTTTCAGTTAGTTATCGAAGGATGCTTCCATTCCTTGAGGATATTTTCAAAGATAATTCAGAGAACTGTGCCTCGGAAAATATTGACTGTTCGAGACCAGAGAAAGAATTGCCAACTACGAATTTGCAACCACCATTTTCGAATTCTCTCAATTCCCTGGATAAATCAGAAGGCTTAGTATCTTGCAACAAGCCATGCGACGGAAATTCAGATGCTCTATCAATGCCTGTGTTGAATACTATGAACGAAACGGCTTGTGAAACAGAAAAAGTTTTAATGCCTGCTGGAGTCAATGATAAACTTCTATCACCACCAAAATTACAGATGCATCAGCTTCACTCCGAACAGGAGATGTTGGATAAATGTAAGTTGAAAATGGGCTCTCATTTGCATGGTGCAGCACTTTTAAATGATCAAGCAGTCTCATCATTAGATCCTGCTGCTACCGATGAGCCTCTGACTGGAGAAGGATCTAGAATGGTCTCTGAACAACCACCAATTATTTCAGAAGGCTGCACAAGTTTGACAGATAATGTTTCTGATGGTGCTAAACTTTCTGAGAGTAACAGATTAGCACCTAATTCTTCAGGCGTAGAAGCATGTATTCTGCCAGAAAATCACATTAATGTTAGAAAGGGAATTCTTAAACGAAACCCACGCGGATGCAGAGGAATCTGCAGTTGTCTGAACTGTTCCTCTTTTCGCCTCCATGCTGAAAGAGCATTTGAATTTTCTAGAAATCAACTGCAAGATGCTGAAGAAGTTGCTTCAGATTTGATGAAAGAGTTGTCGTTTCTCCGTGGTGTGCTAGAAAAATGTTCTGATGGTTCAAAAGGGGATGCTGAATATCATTCACATAAGGTGAAAGAAGCTTGTAGGAAAGCATCTGAAGCAGAGTCAGTTGCAAAAGACCGCCTTCTACAAATGAACTATGAACTTGGCATTCATTGCAGAATCACGTGCTTCCAACGACCAAATGTTAGATTTTCTAGTGAGGTTGAGAAAAGAGCGATTGAAGATGACAAATAG 2442 42.3 MESKHGAIASKRSSIVHQPQALQAGFLHLPRKKPKRLPQSDGLASKDGDKVSYYVAKDLRIKRVFSPNLENRSSVPSGEKISDKERPITANGTCPIGDSGVGKSTEAAEVRNESFRNSNGYVELGDEDRRCNGKSEQLVHSTPPDAEILAGGFVAASSNGCPRSSNGGVLGDTCAKADCRIDSVTRIGSVLKPCSKRKLFKAPGSIAYKRLLPFLLDSDNYTLQGDSCSKRENNLEKKANIESNLCNHAKESSFVDLDASVKIAVLASGMSCNTRELNLPPPDNGDTKNFQNGSDSKNDLTSVKEGSGLEKDNVVCASSLDKRLTENGGATKHQIEDCSSKEQSKTSGTERPGGGNFFISSSISSEVDNSEVHVSKKLCNNVSEDIKREYHFNEELKMPSLDSEVASNPVKEDRRNEKVECTRGTDQNLGSATVGENHCNIAAECDKKYGPCVRNKVVRNPLVQLKSKYSQVSVSYRRMLPFLEDIFKDNSENCASENIDCSRPEKELPTTNLQPPFSNSLNSLDKSEGLVSCNKPCDGNSDALSMPVLNTMNETACETEKVLMPAGVNDKLLSPPKLQMHQLHSEQEMLDKCKLKMGSHLHGAALLNDQAVSSLDPAATDEPLTGEGSRMVSEQPPIISEGCTSLTDNVSDGAKLSESNRLAPNSSGVEACILPENHINVRKGILKRNPRGCRGICSCLNCSSFRLHAERAFEFSRNQLQDAEEVASDLMKELSFLRGVLEKCSDGSKGDAEYHSHKVKEACRKASEAESVAKDRLLQMNYELGIHCRITCFQRPNVRFSSEVEKRAIEDDK 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15971423 15975586 + Maker00026434 Lcy13g0900 651205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0900 813 PANTHER EXPRESSED PROTEIN 44 809 - -
Lcy13g0900 813 MobiDBLite consensus disorder prediction 275 304 - -
Lcy13g0900 813 MobiDBLite consensus disorder prediction 275 303 - -
Lcy13g0900 813 MobiDBLite consensus disorder prediction 345 361 - -
Lcy13g0900 813 MobiDBLite consensus disorder prediction 1 48 - -
Lcy13g0900 813 MobiDBLite consensus disorder prediction 327 344 - -
Lcy13g0900 813 Coils Coil 713 733 - -
Lcy13g0900 813 MobiDBLite consensus disorder prediction 69 102 - -
Lcy13g0900 813 MobiDBLite consensus disorder prediction 327 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0900 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1032 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0542 Cone15ag0564 . . . . . . . . . . Bpe05g01077 . . . Sed09g0007 . . . . . . . . Bhi12g02122 Tan06g1933 Cmetu11g0962 . . . Lcy13g0900 . . . . . . . . . . Cme11g02218
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010855 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32