Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0912 ATGACTACTATTTTTGTAATCTGTAAAAATTTACTTGGTGTGTATTTGTCATATGATGGAAAAGTTGAATTGAGGAAGCAAAGTTCTTGTTCCTTGCAACTGACCAACAAAACGGACAAATATGTTGCCTTCAAGGTTAAAACCACCAATCCCAAGAAGTACTGTGTTCGGCCAAATGCTGGAATTATTTTGCCTAGTAGTGCAAGCAATATTACAGTTACCATGCAAGCTCCAAAGGAGACGCCTCCTGATATGCAGTGCAAGGATAAGTTCTTAATTCAAAGTGTTGTAGCACCAGATGGTACAGCATCAAAGGACATTAGTGCAGAATTGGTGGGATTTAACAAGGGAGATGGTAAAGTAGTAGATGAGTTCAAGATGAGGGTTGTTTACATTTTTGCAAATCCTCCATCACCTGTCCCAGAAGGATCTGAAGAAGGATCTCCTCCCAGGACCACTGCAGCTGAAGATGGAAACCAAAATTTTGCATTGTTTGATGCTGTAAATGTTTTCCAAGTTTCAAGATCTCTGGAGGAGCCTAAAGAGAAATCATCACAGGTAAGATATTCTTCTCTTGCCTCTGTGTTTACATCTAAGGCATTGTCTACCGTTTCTAAGTTGACTGAGGAGAAAACTGCTGCTTTGCAACAGAATCAGAAACTGCGCCAGGAGCTGAAGATGAAACCGTTGGAATTGTATGGAGAGATAGAAGAGTTGGGGGAGAGGGCAAGGGAGATGGGGGGAGAGAGAAGTATGGACAATGAAACCCTGGGATTGTCAGGAGGGAGGGGGAGAGGGAGGAGGAGGCTTCACGATCAAGGTAGGGATTTAGGTTTGTTTGTGAATAAATTTTCTGCCTCCATTGGTCATGATCCAAATCTAAAAGTAGATCTTTTGGCTTTGAACTCCCTTCTTGTCATGTTAAATTCCGTTCTTGGAGTTTCTTCCTTGTTTCTCAAAAAGAGAATACTCCCAAAGGTACCTTCTGGTCACCGATTACAAAGGTCTACGCACGAACTTCTGAGGAAAGAAACGAGCGGAAGGCAGGGTGGTGGTTTCTCTGTATTGTTCGTGGTGCTCGTCGGTCTCATCGGAGTTCTGATCGGCTATTTGGTGAAGAAAACATAG 1128 42.64 MTTIFVICKNLLGVYLSYDGKVELRKQSSCSLQLTNKTDKYVAFKVKTTNPKKYCVRPNAGIILPSSASNITVTMQAPKETPPDMQCKDKFLIQSVVAPDGTASKDISAELVGFNKGDGKVVDEFKMRVVYIFANPPSPVPEGSEEGSPPRTTAAEDGNQNFALFDAVNVFQVSRSLEEPKEKSSQVRYSSLASVFTSKALSTVSKLTEEKTAALQQNQKLRQELKMKPLELYGEIEELGERAREMGGERSMDNETLGLSGGRGRGRRRLHDQGRDLGLFVNKFSASIGHDPNLKVDLLALNSLLVMLNSVLGVSSLFLKKRILPKVPSGHRLQRSTHELLRKETSGRQGGGFSVLFVVLVGLIGVLIGYLVKKT 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 16607827 16619799 + Maker00026352 Lcy13g0912 651217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0912 375 MobiDBLite consensus disorder prediction 136 156 - -
Lcy13g0912 375 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 23 372 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Lcy13g0912 375 Pfam MSP (Major sperm protein) domain 23 110 IPR000535 -
Lcy13g0912 375 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 132 IPR000535 -
Lcy13g0912 375 FunFam Vesicle-associated protein 1-1 15 135 - -
Lcy13g0912 375 Coils Coil 204 224 - -
Lcy13g0912 375 SUPERFAMILY PapD-like 23 144 IPR008962 -
Lcy13g0912 375 Gene3D Immunoglobulins 15 134 IPR013783 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0912 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1827 Lcy-Chr12:39387386 Lcy13g0912 Lcy-Chr13:16607827 2.17E-63 dispersed
Lcy13g0912 Lcy-Chr13:16607827 Lcy6g2147 Lcy-Chr6:45380004 6.98E-35 dispersed
Lcy13g0912 Lcy-Chr13:16607827 Lcy4g1928 Lcy-Chr4:45594350 4.69E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g368 . . . . . . . . . . Cma06g01460 Cma14g01647 Car06g01260 Car14g01480 . Cpe08g00218 Cpe03g01391 Bhi01g00928 Tan10g0943 . . . . . . . . . . . . . . . . Lsi05g01497 . . Cme06g00685 . . Bda11g00542 . . Bpe13g00647 . Bma06g01519 Sed01g4000 Cmo06g01461 Cmo14g01691 . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . . Csa03g01409 Chy06g00652 .
Vvi5g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g4000 . . . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . Lsi09g01624 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000979 4 2 2 4 4 2 3 2 2 2 2 2 3 2 2 4 2 6 4 2 2 3 2 2 2 2 2 6 3 3 83