Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0979 ATGGAGACGCTAGGCCGAAGCGTCTCGACGCTTTGCAAGCTGCGAGGAAAGATCCAGAAATTGCACAGCGTCGCGACGCTGACGCTACGACGACTTGGAGCCCAAGACAAAGTAAGTTTTAGAGGGTTCCACAATGAAGAGTTTGATATAAAGCCAAGAGGAAATAGGTCGAGTCTACAGGCCAGGGAACTAGCCAAGACTACTTTTATTGACTACATGACTGAGATATTGAGCCCGAGGCTAGATGATACCGTGTGCACACAGGTAGAGATCGAGCTCCCAATGCCTGATACACTGACAACGTCTGCTGAAAGTTCCAAATCAAGCTCTAGTTTCGGATTTGTTCCCAGATCTGGAGGGATTACCAGCGGATCCATCGCCGAGCGGACTCAGTTCGTTGCCTACTTGATCTACTCCTCTGTTTTGACTGGCTTTGTTTATCCGGTCGTTTCTCATTGGCTCTGGTCCCCCGATGGTTGGGCCGGGGCTGTGAAATCCGGAGACGTATTGTTGTTTGGATCTGGAGTGATCAACTTCGCTGGCTCCGGCGTCGTCCATATGGTTGGGGGAATTGCAGGTCTGTGGGGCGCGTTGATCGAGGGGCAGAGAATCGGTCGATACAACCACTCCGACCGGTCGGTGGCTCTGCGAGGGCACAACGCCTCTTTAGTCGTGCTCGGAACTTTCATGCTCTGGTACGGTTTCAATCTAGGTTCCTTCACGAAGATTCTCATTCTGTACACCACCGGAAACTTCTACGGCCAGTGGAGCGCCGTCGGATGA 783 52.23 METLGRSVSTLCKLRGKIQKLHSVATLTLRRLGAQDKVSFRGFHNEEFDIKPRGNRSSLQARELAKTTFIDYMTEILSPRLDDTVCTQVEIELPMPDTLTTSAESSKSSSSFGFVPRSGGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWLWSPDGWAGAVKSGDVLLFGSGVINFAGSGVVHMVGGIAGLWGALIEGQRIGRYNHSDRSVALRGHNASLVVLGTFMLWYGFNLGSFTKILILYTTGNFYGQWSAVG 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19348623 19356259 + Maker00026479 Lcy13g0979 651284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0979 260 Gene3D Ammonium transporter AmtB like domains 69 254 IPR029020 -
Lcy13g0979 260 SUPERFAMILY Ammonium transporter 112 243 - -
Lcy13g0979 260 PANTHER AMMONIUM TRANSPORTER 118 243 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Lcy13g0979 260 Pfam Ammonium Transporter Family 118 245 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2072 Lcy-Chr12:42103574 Lcy13g0979 Lcy-Chr13:19348623 1.02E-66 dispersed
Lcy13g0979 Lcy-Chr13:19348623 Lcy4g1431 Lcy-Chr4:35520064 2.15E-64 dispersed
Lcy13g0974 Lcy-Chr13:19069846 Lcy13g0979 Lcy-Chr13:19348623 3.70E-18 proximal
Lcy1g2749 Lcy-Chr1:54553267 Lcy13g0979 Lcy-Chr13:19348623 2.90E-14 wgd
Lcy10g0649 Lcy-Chr10:18621384 Lcy13g0979 Lcy-Chr13:19348623 6.84E-13 wgd
Lcy10g0548 Lcy-Chr10:14463871 Lcy13g0979 Lcy-Chr13:19348623 4.29E-08 wgd
Lcy10g0600 Lcy-Chr10:16821363 Lcy13g0979 Lcy-Chr13:19348623 7.32E-24 wgd
Lcy10g0741 Lcy-Chr10:22327253 Lcy13g0979 Lcy-Chr13:19348623 4.93E-13 wgd
Lcy10g0710 Lcy-Chr10:21179258 Lcy13g0979 Lcy-Chr13:19348623 2.12E-13 wgd
Lcy11g0788 Lcy-Chr11:23469116 Lcy13g0979 Lcy-Chr13:19348623 7.72E-13 wgd
Lcy12g1245 Lcy-Chr12:26030228 Lcy13g0979 Lcy-Chr13:19348623 1.08E-22 wgd
Lcy12g1290 Lcy-Chr12:27600250 Lcy13g0979 Lcy-Chr13:19348623 6.34E-13 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy4g1161 Lcy-Chr4:24375559 1.35E-24 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy4g1188 Lcy-Chr4:25575764 1.02E-16 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy6g1533 Lcy-Chr6:25471603 7.19E-13 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy6g1726 Lcy-Chr6:33684356 2.88E-22 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy7g1745 Lcy-Chr7:36749564 3.92E-20 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy7g1525 Lcy-Chr7:27321991 1.86E-16 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy7g1590 Lcy-Chr7:30846726 4.90E-21 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy8g0650 Lcy-Chr8:23329444 3.16E-23 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy9g0223 Lcy-Chr9:5503528 1.17E-13 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy9g0714 Lcy-Chr9:24333604 2.70E-13 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy9g0512 Lcy-Chr9:15686084 1.22E-19 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy9g0678 Lcy-Chr9:22742495 3.66E-21 wgd
Lcy13g0979 Lcy-Chr13:19348623 Lcy9g0876 Lcy-Chr9:29195022 4.93E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0979 K03320 - csv:101208366 257.299