Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1061 ATGGCAAGCTTGGTATCGTGTAATCCAGATGGATGGTGCAGTTTAAAAAGTTTGCTGTTGGGCACCGGAGGGTGCTTGGTTTGGACATGGATCATTATCCATAGATGGAACCAAAGAAACAAGACAGGTCCCAAAACATGGCCACTCGTAGGAGCAGCAATCGAACAGTTCCTAAACTACCACAGAATGCACGATTGGCTTCTCGGTTACCTCAATCTCTCCAAAACTGTTGTTGTCCCTATGCCTTTCACTACTTATACTTACATTGCTGACCCGGCTAATGTTCAGCACATTCTCAAGACCAACTTTGCTAATTATCCCAAGGGTGATTTATATCATTCGTACATGGAAGTGCTTCTTGGCGATGGGATCTTCAACGTAGATGGAGAGCTGTGGAGGAAACAGAGGAAAACTGCGAGCTTTGAATTTGCGTCAAAAAATTTGAGGGATTTCAGTGCCCTAGTTTTTAGAGAATACAGTCTCAAGCTCTCAGCTATTTTAACTCGGGCGACTTTAGACAAACAACAAGTTGACATGCAGGAACTGTTGATGAGAATGACTTTGGACTCCATATGCAAGGTGGGATTTGGTGTTGAAATTGGATCCTTAGCTCCAAATTTGCCAGAAAATCGCTTCGCTAAGGCTTTTGACACAGCAAACATCATCGTCACCCTTCGCTTCATTGATCCTTTGTGGAAAATTAAAAGATTCTTTAATTTGGGATCCGAAGCTCTCCTCGACAAGTCCATCAAAATCATCGATGACTTTACCTACTCTGTAATTGCCACAAGGAAAAAAGAGATAGAAGAAGCTCGAACCACAGGCAAAGATGGCATTAAGATAAAACATGACATATTATCAAGATTCATTGAGTTAGGCGAAGATCCAAGCAACAATTTCACAAACAAAAGCTTGAGAGATGTGGTTCTCAACTTTGTGATTGCTGGACGTGACACAACAGCAGCCACTCTTTCATGGGCTATTTATATGGTAATGACTCATTCTCATGTAGCTGACAAACTTTACTCAGAGCTCAAGAGTTTTGAAGAAGAAAGAGCCAAAGAAGAGAGAATTTCATTGCTTCAGCACCATCCAACAACTGATCTTCAATCCTTCGAGAGAAGAGTTATGCAGTTTGCACAACTCCTCAATTACGATTCACTTGCCAGATTGCATTATTTGCATGCTATGATCACTGAGACACTTCGTCTTTACCCTGCAGTGCCCCAGGACCCAAAGGGAGTTTTGGAGGATGATGTTTTACCAGATGGAACAAAGGTAAAAGCAGGAGGAATGGTGACATATGTTCCTTACTCAATGGGAAGAATGGAATACAATTGGGGCTCTGATGCAACTTGTTTTAACCCTGAAAGATGGCTCAAACAAGGCCTTTTCCACTCCGAATCTCCATTCAAGTTCACAGCTTTTCAGGCTGGACCAAGGATCTGCATGGGGAAAGACTCGGCATATCTGCAAATGAAGATGGCTCTTGCCATTTTGTGCAGATTCTACAAATTTAGTTTGGTCAGTGGCCATCAAGTCAACTACAGAATGATGACTATTCTCTCCATGGCCAATGGCTTGAAAGTTACCGTTGCTACACGCTCTTGA 1611 42.4 MASLVSCNPDGWCSLKSLLLGTGGCLVWTWIIIHRWNQRNKTGPKTWPLVGAAIEQFLNYHRMHDWLLGYLNLSKTVVVPMPFTTYTYIADPANVQHILKTNFANYPKGDLYHSYMEVLLGDGIFNVDGELWRKQRKTASFEFASKNLRDFSALVFREYSLKLSAILTRATLDKQQVDMQELLMRMTLDSICKVGFGVEIGSLAPNLPENRFAKAFDTANIIVTLRFIDPLWKIKRFFNLGSEALLDKSIKIIDDFTYSVIATRKKEIEEARTTGKDGIKIKHDILSRFIELGEDPSNNFTNKSLRDVVLNFVIAGRDTTAATLSWAIYMVMTHSHVADKLYSELKSFEEERAKEERISLLQHHPTTDLQSFERRVMQFAQLLNYDSLARLHYLHAMITETLRLYPAVPQDPKGVLEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGSDATCFNPERWLKQGLFHSESPFKFTAFQAGPRICMGKDSAYLQMKMALAILCRFYKFSLVSGHQVNYRMMTILSMANGLKVTVATRS 536
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 23713799 23718747 + Maker00026877 Lcy13g1061 651366
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1061 536 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 PRINTS E-class P450 group I signature 473 483 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 PRINTS E-class P450 group I signature 483 506 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 PRINTS E-class P450 group I signature 395 413 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 FunFam Alkane hydroxylase MAH1 37 536 - -
Lcy13g1061 536 CDD CYP86A 75 528 - -
Lcy13g1061 536 PRINTS P450 superfamily signature 396 407 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 PRINTS P450 superfamily signature 474 483 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 PRINTS P450 superfamily signature 483 494 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 Pfam Cytochrome P450 43 527 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 SUPERFAMILY Cytochrome P450 33 535 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 Gene3D Cytochrome P450 27 536 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g1061 536 PANTHER CYTOCHROME P450 30 528 - -
Lcy13g1061 536 Coils Coil 338 358 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1912 Lcy-Chr11:42827593 Lcy13g1061 Lcy-Chr13:23713799 1.50E-123 dispersed
Lcy11g1915 Lcy-Chr11:42890679 Lcy13g1061 Lcy-Chr13:23713799 3.09E-130 dispersed
Lcy13g1061 Lcy-Chr13:23713799 Lcy3g1870 Lcy-Chr3:45893797 8.05E-116 dispersed
Lcy13g1061 Lcy-Chr13:23713799 Lcy5g1143 Lcy-Chr5:24565175 1.14E-98 wgd
Lcy13g1061 Lcy-Chr13:23713799 Lcy5g0812 Lcy-Chr5:12554633 3.26E-103 wgd
Lcy13g1061 Lcy-Chr13:23713799 Lcy5g1119 Lcy-Chr5:23354334 6.58E-87 wgd
Lcy13g1061 Lcy-Chr13:23713799 Lcy7g1694 Lcy-Chr7:34189017 1.08E-12 wgd
Lcy13g1061 Lcy-Chr13:23713799 Lcy8g0844 Lcy-Chr8:30430463 3.42E-11 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1061 K20495 - csv:101222076 904.049