Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1150 ATGGCGGGGAAGCCCAACTCGGTTTCCTTCAGGGTTCCCTACAGGAACCTCCACGATGCAGAAGTGGAGATGGTCGCTGTCGACGAGCAGCAGCTCCAAGGGATCGATCTCAATTCTCCTTCTTCTGATACATGTCCCAATGGAACCCCAGACAGTTCGTCATCAACGCCTCATGTTAGATCTACGCCCAATAGTCTGATTATCTTGATTCTCAGTTGTACTATTGCGGCCGGTGTTCAATTTGGTTGGGCATTGCAGCTTTCCCTACTAACTCCTTATATTCAGGTTTTGTTTCTCGCTCGTGTCTCTGATTTCGTTTTCGTCTTTGAGTCGCTAGGTACACTTGGAATTGAGCATGCATTTTCTTCGTTTATTTGGCTTTGCGGTCCCATCACTGGTCTCGTGGCGCAAGGCGCAACCTTAGCGCCTCGCTTCGAAGAAGCGAGGCGCAGTGAGGAAGGCGCGGCGAAGGCGCGTCCAAGGCTCGCGCCTTCCTCGAAGCGAGACCTCCGTACTTGGTCATTCGGAGTGTCAAATATCGTATTCAAGCTTGTTCAACCATGTGTTGGTATATGGAGTGATAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCTTTAATGATAGCAGTTGCTGTAAGCTGTGTTTTTCTGGGAGATACGAAGGAACATTGCAGAGTATATAAGGGAACACGAACAAGGGCAGCTATTATCTTTGTAATAGGCTTTTGGATGCTTGATCTTGCAAACAATACGGTGCAGGGTCCTGCTCGTGCTCTTCTAGCTGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCGGTATTTTGTTCATGGATGGCTGTTGGTAATATCCTAGGTTTTTCAGCAGGAGCTAGTGGAAACTGGCACAAATGGTTTCCTTTCCTTTTGAGCGATGCTTGCTGTGAAGCCTGTGGAAACCTTAAAGCAGCATTTCTTGTTGCTGTGCTTTTTCTAACCATATGTACTCTTGTTACCATATATTTTGCCGATGAAGTTCCCCTTACTGCTGTAGATCAACCACCACGTTTATCAGATTCTGCTCCTTTGTTGAATGGGAATGCACAAAAAAATCCTAATATTTTAAAACCAGAACTTAACAGTCCTAATGGGAGCAATGTTGATTATGGCTATCAAGAAAATATGAATCTGCAAAATTCAAAATCAAAAATTGAGGAAAATCACAGTGAAGGTTATTATGATGGTCCTGCAACAGTGGTAGTCAAATTGTTGACCAGTTTAAGACATTTACCACCGGCCATGCATTCAGTGCTTCTTGTGATGGCTCTTAGCTGGTTATCCTGGTTTCCCTTCTTCTTATTCGATACAGATTGGATGGGAAGGGAAGTGTATCATGGGGACCCAAAAGGCAGTTTGACTGAAGAACAGGTTTATGATCAGGGTGTCAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTTCTTGGTATCAGTTCTTTCTTTATAGAGCCAATGTGTCAGCGCATGGGACCAAGACTTGTCTGGGCAATGAGCAACTTTATTGTGTTTGCATGCATGATGGGAACTACTGTTATCAGTTTAATATCCGTCAGTCAATACTCTGAAGGAATTGAACATATTATTGGGGGAAATTCAACAATAAAAAATGCTGCATTGGCTGTTTTTGCTCTTCTTGGTTTTCCTCTTGCTATAACATATAGCGTTCCCTTTTCTTTGACAGCAGAATTGACTGCCGATTCTGGTGGTGGGCAAGGATTGGCTATAGGAGTTCTCAATCTTGCAGTTGTTATTCCCCAGATGATTGTATCCTTGGGTGCTGGGCCATGGGATGCCTTATTCAGTGGAGGAAACATTCCTGCATTTGCTTTGGCTTCTGTATGTGCGCTTGCGGCTGGAGTTGTTGCGGTTCTTAGACTGCCTAATCACACCAACAGCTCTTTCAAATCAACAGGTTTTCATTTTGGTTAA 1992 43.98 MAGKPNSVSFRVPYRNLHDAEVEMVAVDEQQLQGIDLNSPSSDTCPNGTPDSSSSTPHVRSTPNSLIILILSCTIAAGVQFGWALQLSLLTPYIQVLFLARVSDFVFVFESLGTLGIEHAFSSFIWLCGPITGLVAQGATLAPRFEEARRSEEGAAKARPRLAPSSKRDLRTWSFGVSNIVFKLVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVSCVFLGDTKEHCRVYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHKWFPFLLSDACCEACGNLKAAFLVAVLFLTICTLVTIYFADEVPLTAVDQPPRLSDSAPLLNGNAQKNPNILKPELNSPNGSNVDYGYQENMNLQNSKSKIEENHSEGYYDGPATVVVKLLTSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSLTEEQVYDQGVREGAFGLLLNSVVLGISSFFIEPMCQRMGPRLVWAMSNFIVFACMMGTTVISLISVSQYSEGIEHIIGGNSTIKNAALAVFALLGFPLAITYSVPFSLTAELTADSGGGQGLAIGVLNLAVVIPQMIVSLGAGPWDALFSGGNIPAFALASVCALAAGVVAVLRLPNHTNSSFKSTGFHFG 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26546029 26552869 - Maker00026896 Lcy13g1150 651455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1150 663 FunFam Sucrose transport protein SUT5 435 655 - -
Lcy13g1150 663 PANTHER SUGAR TRANSPORTER 65 645 - GO:0008506(PANTHER)|GO:0016020(PANTHER)
Lcy13g1150 663 CDD MFS_SLC45_SUC 69 645 - -
Lcy13g1150 663 MobiDBLite consensus disorder prediction 38 59 - -
Lcy13g1150 663 Pfam Major Facilitator Superfamily 173 536 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy13g1150 663 SUPERFAMILY MFS general substrate transporter 172 650 IPR036259 -
Lcy13g1150 663 Gene3D MFS general substrate transporter like domains 162 647 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1150 K15378 - - csv:101205348 1034.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1150 Lcy-Chr13:26546029 Lcy4g1200 Lcy-Chr4:26072899 2.70E-115 dispersed
Lcy13g1150 Lcy-Chr13:26546029 Lcy4g1195 Lcy-Chr4:25885630 2.70E-115 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g1200 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy4g1195 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy4g1200 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1195 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1200 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy4g1195 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy13g1150 . 223 664 Sucrose Transporter Gene Family AT2G02860 71.7 2.9e-182 635.6
Lcy4g1200 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1
Lcy4g1195 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1
Lcy4g1200 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy4g1195 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy13g1450 . 18 441 Sucrose Transporter Gene Family AT1G09960 67.4 7.9e-165 577.8
Lcy4g1200 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1195 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1200 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1195 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1200 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1195 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1200 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1195 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1200 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy4g1195 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy13g1150 . 223 664 Sucrose Transporter Gene Family AT2G02860 71.7 2.9e-182 635.6
Lcy13g1450 . 18 441 Sucrose Transporter Gene Family AT1G09960 67.4 7.9e-165 577.8
Lcy4g1200 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1195 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1200 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1195 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1200 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy4g1195 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy4g1200 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy4g1195 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy4g1200 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1195 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1200 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1
Lcy4g1195 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41