Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1200 ATGGCTTTGCTTTTGGATCACCCCAAAAGGCCTCATACTAATGGAGAACTTGTCCTCCCTTATATACCCATGGTCTTCCCCTTGTCTAGCCAATGTGGGACTTTGGTTGCATTCTCCCACATCCTTTCAGAGCAAAAATTGGCAGCCATTGGCCCTCCTGATGTGAGCATGGAAGGCCCTCTGTTGCAAAAAGTGTGCGCCTTGTACCACCAAATCTCGAGCCTCACCAGCCTCAAGCCTTCCAAACATGTCGACACTCTTTTCACCCAACTTGCCCTACTTGAACTTCACTTCTCCGCCATTTTGGCCAGCTCCTTTCACAACCCCATTCACAACTTGTCCATCTTCCCTTACTACTCTAATGACTTGAAGCTCTCGCTCCTCGAGTTCGATATCTTGACGTCTCATTGCCCTTGCCTGCCCGCTACCGTTGCGTTTGTTGGCTCTGACCCGCTCCCCCTCTCCTCCATTGTCATGGCCTCCACTCATCTCAAGGGTAACCATTTTGTTGAATACTTCCTCTGTATAGGTACTGTTTTCCACAACTTTGACATCGATTCGACTGCGAACTCCATAGCGGGTCGGTTGGTCAGCTCCGACCCGGACCTGTCGCGGCGGATGGTGTTTCACACGAAGGATGTAATGGAGGTGACGAAGGCATTGGGGGAGTACGAGGTGGTGTTTCTAGCAGCATTGGTGGAGTTGGAAGAGGAAGATAAGGCAAGGGTTTTGAGGCATTTAGGGAAGCATATGGCACCCGGGGCTTACTTGATGCTGAGGAGTGCACATGGGGCTAGGGATTTTTTGTACCCTGTTGTCGATGTTTGTGACGTTGAAGCTTCTGGATTTGAGATTCTCTCTGCGTTTCACCCAACTGACGAAGTCATAAACTCTGTTGTTATTGCAAGGAAGGTGTTCGATCTTATTCCAGAAGCCGAAGGAAACTCTGTTGAAGATGATGATAATGAGAAGCGAGGTGTTTTAGTTAACACCCCTATTTTGTTGGCTGAAAAATGCTCTGGGTTCAAAGGATTTGGTCCCATGATCGAGGAGCTTGCCATGGAAGAGCAACTCTCTTGA 1080 48.89 MALLLDHPKRPHTNGELVLPYIPMVFPLSSQCGTLVAFSHILSEQKLAAIGPPDVSMEGPLLQKVCALYHQISSLTSLKPSKHVDTLFTQLALLELHFSAILASSFHNPIHNLSIFPYYSNDLKLSLLEFDILTSHCPCLPATVAFVGSDPLPLSSIVMASTHLKGNHFVEYFLCIGTVFHNFDIDSTANSIAGRLVSSDPDLSRRMVFHTKDVMEVTKALGEYEVVFLAALVELEEEDKARVLRHLGKHMAPGAYLMLRSAHGARDFLYPVVDVCDVEASGFEILSAFHPTDEVINSVVIARKVFDLIPEAEGNSVEDDDNEKRGVLVNTPILLAEKCSGFKGFGPMIEELAMEEQLS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 28520461 28522183 - Maker00025651 Lcy13g1200 651505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1200 359 Pfam Nicotianamine synthase protein 92 305 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy13g1200 359 Pfam Nicotianamine synthase protein 60 91 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy13g1200 359 PANTHER NICOTIANAMINE SYNTHASE 3 93 306 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy13g1200 359 Gene3D Vaccinia Virus protein VP39 45 306 IPR029063 -
Lcy13g1200 359 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 16 309 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1200 Lcy-Chr13:28520461 Lcy4g1787 Lcy-Chr4:43931314 8.69E-190 dispersed
Lcy13g1200 Lcy-Chr13:28520461 Lcy2g2337 Lcy-Chr2:49174825 9.98E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1200 K05953 - csv:101203651 379.793