Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1208 ATGGCGGCTCGGAGGATATCTTCGCTCTTATCTCGTTCCCTTGCTTCTTCACCTGCTCTCCTTTCCAAAGGGAGGAGGCCTTCCGGTGGCAGAGCAACCGGCAAATACAGCACTGCGGCTGCTGTTGAAGACCCGATTGCTCCATCTGTGAAAGTAAATTACACGCAGCTGTTAATCAACGGACAGTTTGTGGATTCGGCCTCAGGAAAAACTTTTCCTACACTGGACCCAAGGACTGGGGAAGTCATTGCGAATGTTGCTGAAGGTGACGCCAGAGATGTTGATCTTGCAGTTTCAGCTGCACGCAAGGCGTTTGATGAAGGGCCTTGGCCTAAGATGACTGCCTATGAAAGATCAAAGATAATGTTGCGATTTGCTGATTTGGTTGAAAAGCATGCCGATGAAGTAGCAGCACTAGAAACTTGGGACAATGGGAAAACATACGAACAGTCAGCCAAACTGGAAGTCCCAATGTTTGTGCGCCTCTTTCGATACTATGCCGGATGGGCCGACAAGATTCACGGACTCACAGTTCCAGCTGATGGCTCGTATCATGTGCAGACCTTGCACGAACCAATTGGCGTTGCGGGGCAGATTATTCCATGGAACTTTCCTCTGCTCATGTTTGCCTGGAAGGTTGGCCCAGCTTTAGCATGTGGGAATACTGTTGTTCTGAAGACAGCCGAGCAGACACCTTTGTCTGCTCTCTATGTGGCTAAGCTATTCCATGAGGCTGGACTTCCTGAGGGCGTTCTGAATATTGTTTCCGGTTATGGACCCACTGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGATAAGCTTGCTTTTACTGGATCAACCGAAACAGGGAAGATTGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCAGTAACGTTGGAGCTTGGTGGAAAATCCCCTTTCATAGTATGCGAGGATGCTGATGTGGATAAGGCTGTCGAGATGGCACACTTTGCTCTCTTCTTCAACCAGGGACAATGCTGCTGTGCTGGTTCTCGTACTTTTGTTCATGAAAGAGTATATGACGAGTTTCTAGAGAAGGCAAGGAAACGAGCTGCGAACCGCGTTGTTGGTGATCCATTCCTAGGTGGAATCGAGCAAGGTCCTCAGGTGGATGGCGAACAATTCAAAAAGATTTTGAGATATATAAAATCTGGGATTGAAGGTGGAGCAACTCTTGAAGCTGGAGGAGAGAGGTTTGGTTCCAAGGGTTACTATATCCAGCCAACAGTTTTCTCAAACGTCAAGGATGACATGAAAATTGCAGAGGAGGAGATTTTTGGTCCTGTACAGACCATCTTGAAATTCAAAGATATTGAGGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCCGCTGGGGTGTTTACTCAACAAATCGACACAGCCAACAGGCTGACACGTGCGCTGAGAGTTGGGTCTGTGTGGATCAATTGCTTTGATATATTTGATGCTGCAATTCCTTTTGGTGGGTACAAGATGAGCGGACATGGGCGAGAGAAGGGCATTTACAGCCTCAGCAATTACCTGCAAGTGAAGGCTGTTGTCACTCCTCTAGAAAACCCTGCTTGGCTTTAG 1608 47.89 MAARRISSLLSRSLASSPALLSKGRRPSGGRATGKYSTAAAVEDPIAPSVKVNYTQLLINGQFVDSASGKTFPTLDPRTGEVIANVAEGDARDVDLAVSAARKAFDEGPWPKMTAYERSKIMLRFADLVEKHADEVAALETWDNGKTYEQSAKLEVPMFVRLFRYYAGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKTAEQTPLSALYVAKLFHEAGLPEGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHERVYDEFLEKARKRAANRVVGDPFLGGIEQGPQVDGEQFKKILRYIKSGIEGGATLEAGGERFGSKGYYIQPTVFSNVKDDMKIAEEEIFGPVQTILKFKDIEEVIRRANASRYGLAAGVFTQQIDTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLENPAWL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 28743166 28747084 + Maker00025742 Lcy13g1208 651513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1208 535 Pfam Aldehyde dehydrogenase family 63 525 IPR015590 GO:0016491(InterPro)
Lcy13g1208 535 FunFam Aldehyde dehydrogenase, putative 497 523 - -
Lcy13g1208 535 CDD ALDH_F2BC 52 527 - -
Lcy13g1208 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 59 523 IPR016162 GO:0016491(InterPro)
Lcy13g1208 535 SUPERFAMILY ALDH-like 52 529 IPR016161 GO:0016491(InterPro)
Lcy13g1208 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491(InterPro)
Lcy13g1208 535 FunFam Mitochondrial aldehyde dehydrogenase 2 307 496 - -
Lcy13g1208 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620(InterPro)
Lcy13g1208 535 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 59 331 - -
Lcy13g1208 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491(InterPro)
Lcy13g1208 535 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 50 527 - GO:0004029(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1208 Lcy-Chr13:28743166 Lcy1g0843 Lcy-Chr1:7198187 2.08E-47 dispersed
Lcy2g0624 Lcy-Chr2:5328987 Lcy13g1208 Lcy-Chr13:28743166 3.20E-117 transposed
Lcy2g0648 Lcy-Chr2:5532930 Lcy13g1208 Lcy-Chr13:28743166 4.85e-319 transposed
Lcy2g0806 Lcy-Chr2:7247642 Lcy13g1208 Lcy-Chr13:28743166 1.18E-197 transposed
Lcy8g1656 Lcy-Chr8:43168761 Lcy13g1208 Lcy-Chr13:28743166 2.20E-12 transposed
Lcy12g0802 Lcy-Chr12:10447106 Lcy13g1208 Lcy-Chr13:28743166 1.46E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1208 K00128 - csv:101202756 980.704