Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1261 ATGGAAGGGCCTTTTGTGTTCTGGACAGCGGTTTTTGTAGTTTTGGCATTCCTGGAAGTTGCTTCTTCTACGCTGTCTCCGTCTGGTGTAAACTACGAAGTTGTAGCTTTGATGGCCATTAAAAATGATTTAATAGATCCCCACAACGTTTTGGAGAATTGGGATTCTAACTCTGTGGATCCCTGTAGCTGGAGAATGGTCACTTGTTTTCCAGATGGATATGTTTCTGCTTTGGGGCTACCAAGCCAGAGTTTGTCTGGGGTCTTATCACCGGGGATTGGAAACCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCGGGGCCAATTCCTGCAACCATTGGAAAGTTAGAGAACCTCCAGACTCTTGATCTCTCCAACAATGTATTTAGTGGTGAAATACCCAGTTCACTAGGGGACTTGAAGAAGCTGAACTATTTGCGACTAAATAACAACAGCCTAACTGGACCTTGTCCTGAGTCTCTATCCAAAGTTGAAGGTCTCACACTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTGTTGGCAACCCTTTGATCTGTGGCCCAAACAACTGTTCTGCCATCCTTCCAGAGCCGCTGTCCTTTGCCCCAGATGCTCTCGAAGGTGTGGGAAATTTGGGATTTGGTACGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTAGTCTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAAGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACCGATCATTTCAACACAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTGAATGATGGGACTCTGGTAGCAGTTAAAAGGTTGAAGGATTATAACACCGCTGGTGGAGAGATACAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTACATCGAAATCTTCTCAGGCTTTTTGGCTTCTGTTCTACTGAGAGTGAGAGACTTCTGGTTTACCCATTCATGCCCAATGGAAGCGTTGCATCTCGTCTAAGAGATCATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCTTGGGTACAGCTAGAGGATTGGTGTACTTACATGAGCAGTGTGACCCCAAAATAATCCACCGTGATGTAAAGGCAGCCAACATTCTCCTTGATGAAGACTTCGAAGCCGTCGTTGGAGACTTCGGGTTGGCAAAACTTTTGGATCACAGGGATTCTCATGTGACTACAGCGGTTCGTGGCACTGTTGGCCATATTGCTCCAGAGTACTTATCAACAGGACAATCGTCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTCTTGGAGTTGATTACTGGTCAGAAGGCTCTGGATTTTGGCCGAGGAGCAAACCAGAAAGGCGTGATGCTCGACTGGGTGAAGAAGTTGCATCAGGAAGGAAAGCTGAATCTGATGGTAGATAAGGATCTAAGAGGTAACTTCGACAGAGTTGAGTTAGAGGAAATAGTCCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACAGACCCAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGGTTAGCTGAGAAATGGGAAGCGTCACAGCAGATCGAGACGCCGAGATACCGAGCATTGGAGAATCCCCCTCAACGGTACTCAGATTATATAGAAGAATCTTCTCTGATAGTAGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1872 44.87 MEGPFVFWTAVFVVLAFLEVASSTLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCFPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVFSGEIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPNNCSAILPEPLSFAPDALEGVGNLGFGTSHRKAIAFGASFSAAFIVLVLISLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNTKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVASRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNLMVDKDLRGNFDRVELEEIVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQQIETPRYRALENPPQRYSDYIEESSLIVEAMELSGPR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 29715591 29720368 + Maker00025696 Lcy13g1261 651566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1261 623 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Lcy13g1261 623 SUPERFAMILY Protein kinase-like (PK-like) 284 580 IPR011009 -
Lcy13g1261 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1261 623 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
Lcy13g1261 623 SUPERFAMILY L domain-like 31 193 - -
Lcy13g1261 623 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524(InterPro)
Lcy13g1261 623 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
Lcy13g1261 623 ProSiteProfiles Protein kinase domain profile. 300 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1261 623 SMART serkin_6 300 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1261 623 Pfam Protein tyrosine and serine/threonine kinase 302 573 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1261 623 Gene3D Transferase(Phosphotransferase) domain 1 377 593 - -
Lcy13g1261 623 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Lcy13g1261 623 FunFam Somatic embryogenesis receptor-like kinase 1 377 593 - -
Lcy13g1261 623 FunFam Somatic embryogenesis receptor kinase 1 269 376 - -
Lcy13g1261 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 623 - -
Lcy13g1261 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2094 Lcy-Chr10:45009126 Lcy13g1261 Lcy-Chr13:29715591 5.79E-232 dispersed
Lcy13g1261 Lcy-Chr13:29715591 Lcy7g0388 Lcy-Chr7:3288478 3.78E-239 dispersed
Lcy10g1527 Lcy-Chr10:39732833 Lcy13g1261 Lcy-Chr13:29715591 6.43E-217 wgd
Lcy11g0876 Lcy-Chr11:26002677 Lcy13g1261 Lcy-Chr13:29715591 8.85E-69 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy13g1261 Lcy-Chr13:29715591 3.39E-69 wgd
Lcy13g1261 Lcy-Chr13:29715591 Lcy9g0772 Lcy-Chr9:26121564 5.25E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65570 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1261 - - - 0.0