Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1266 ATGTGGTTTGATCATCCTTGTTGTTTTGGTTATATTGTGAACTCTGTTTGGACTGTTGATCACTGTATATTGGGACTATATCAATATAACAGTGTTATCGTGATCTTGGGAACTTTTGTGCTGCATATTGTGTTTTGTTTTCCTGTTTACCTTACAACTGCACTCTTAGATAATGCGTTAAAAGCAAGTGAATGGTGTGAAAACGGGGGTGGAACTATGACAGAAACTTGGGACTCTCATCTTTCAAGATCATTAACCAATAAGATATGCCTTAAAGAGAGATTGTTTTGTGATGGATCCTATAGAAGCAGCTTGGAAGATAATGTTGATGAGTTCCACAATATCACATTGGATCCATCTTTGCAAATGCCGGAGAAAATTGTTTTACCTGAGTATGGGATAGGTGGTTTTCTTGCTTTCGATGTATGTCTGGCTGAAAATTCCCCTTTTGGTTGTGCATTCATTATTGTAGATGAGGACGCTATGTCATCAGATGATGAGCTTAATTGGGGAGAGAGGGAACTACAAGATGCTCAAATAAGGTTAGAAGACAAAGGTCTTAAAGATATGCTCTTAAGTAGATTTGGCAGCCACATTGGTACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGGAGGAAAGTACTGCTCGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAGATTGCGCTGGCAGAGACAACAGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATTTGCAGCTATGGATAATGGGCCTGAACATTTTTACGGTAGGCTTGACTCTTAA 876 38.93 MWFDHPCCFGYIVNSVWTVDHCILGLYQYNSVIVILGTFVLHIVFCFPVYLTTALLDNALKASEWCENGGGTMTETWDSHLSRSLTNKICLKERLFCDGSYRSSLEDNVDEFHNITLDPSLQMPEKIVLPEYGIGGFLAFDVCLAENSPFGCAFIIVDEDAMSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKIALAETTGLDPKQINNWFINQRKRHWKPSESMQFAAMDNGPEHFYGRLDS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 29807125 29809768 + Maker00025662 Lcy13g1266 651571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1266 291 ProSitePatterns 'Homeobox' domain signature. 244 267 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy13g1266 291 SMART ELK_2 186 207 IPR005539 GO:0003677(InterPro)
Lcy13g1266 291 SMART HOX_1 208 273 IPR001356 GO:0003677(InterPro)
Lcy13g1266 291 CDD homeodomain 220 270 IPR001356 GO:0003677(InterPro)
Lcy13g1266 291 Pfam ELK domain 187 207 IPR005539 GO:0003677(InterPro)
Lcy13g1266 291 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 166 278 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy13g1266 291 Gene3D - 205 278 - -
Lcy13g1266 291 Pfam Homeobox KN domain 226 265 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy13g1266 291 SUPERFAMILY Homeodomain-like 207 279 IPR009057 -
Lcy13g1266 291 ProSiteProfiles 'Homeobox' domain profile. 206 269 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1266 Lcy-Chr13:29807125 Lcy2g0672 Lcy-Chr2:5747501 3.83E-55 dispersed
Lcy13g1266 Lcy-Chr13:29807125 Lcy7g0162 Lcy-Chr7:1454864 8.60E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19385 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1266 - - - 0.0