Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1270 ATGAAGACTGGATCGCCACTTGTTTCCGAATATGGATTGTTCATTTTTATCACCGCGCTTCTGTTACTTGAGACGTCGACAGTGGCAGACCCCAGATCCCGAACGGTGAAGATTCTCTGTTCGACTGTGCTAGAGCATAATACAACGGCTTTTGTGCCGAATTTCGTGGGCACAATGCAAATCATCAGTGACCAAATGCGAACCGGTGGTTTTGGAGTGGCAGTTGCCGGGAAAGGGCCCGACGCCAACTACGGCCTCGCTCAGTGCTACGGAGATTTGTCGCTCATGGATTGTGTCTTGTGTTATGCGGAAGCCCGTACTGTCCTTCCTCAGTGCTTCCCTTTCAACGGCGGCCGAATTTTCCTCGATGGCTGCTTCATGAGGGCCGAAAACTACAGCTTCTATGACGAATTTAAGGGGCCTCTGGACAGGGCTGTCTGCGGCAACACTTCCATTAGCAACTCCATTTTCGGACAGTCGGCCAGGCAGGCTGTGGCCCGAGCGATTGACACTGCACCCAACAATGGAGGCTATGCGAGACTTCAAGTGGCTCTCCCTGAAACCCCCAATGCCTCGGTTTACCTGTTGGCTCAGTGCTGGAGGAATTTGAATCGCAGCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTGCCTCGATCTGAAGCTAGAGCCCTCAACACAGGTTGCTTCATGAGATACTCAAACGTTGACTTTCTAAATGCGGAACCTCGAGCTGCAAGGTCAAGAGGTACTATTATAGAAATTATAGTCTCACTGGTGAGCTCTGTTGCTGTTTTGGTCGTTGGAGTGTTGATTGGAATCTACTTCTGGAATAACAGATATATAAATAAGAAACGAAGAGATCGAGATAGAGGCAGATCCCTCAATTGGGAGAAGAGATTTGATATTATAGTGGGAACAGTTGAAGGTTTGGTTTACTTGCATGAGAACTCGAAAACCAAGATCATTCACAGAGACATCAAGGCCAGTAACATCCTGCTGGACTCAAAGCTTCGAGCTAAAATTGCTGATTTTGGATTAGCTAGATCCTTCGAAGAAGATGTGAGCCACATCAGCACTGCCATTGCCGGAACCTTGGGATATATGGCGCCAGAGTACTTAGCTCACGGCCAACTAACAGAAAAGGCAGATGTCTACAGTTTTGGTGTGGTTTTGCTGGAAACCATCACTGGGATACAAAACAGCAGGAGCAAAACCTCGGACTACTTGGAAAGCATAGTACTAATTACATGGAAGCACTTTCAAGCGGGAACAGTGGAAAGGATATACGATCCGAACCTGATGGTGGATGAGAAGGACGAGGATGGGAGCATGAAAGAGGAGATATTGAGAGTGCTGCACATAGGGCTTCTGTGTACACAGGAGAGTGCATCACTGCGACCCACAATGTCAAAGGTTCTACAGATGCTGATGAAGAAGGAAGAGAGACTTCCAGCGCCGACCAACCCACCATTCATGGACGAGAGGACAATGGAACTCAACGACACGAGCGAGGACCCATCATACTTCAACGTCACAGAAGGTTCTTCGTCAGCTGCCACCGTCACCCATAGTTCATTCCATCCAAGATATGGTGAAGGAGAAGGTAGTCTTGGCAATAATTGTGCGAAGCAGCTCTGTTCTGTAGAAATCGGCCAGAGAAACCAAAACCCAGATTCAATGGCGATCCAGCTTGTCTATGCTTCCAAATATGCCCTATTTTCAGTCCTCGCTATTCCTCTGCTGCTCGCAAGTTTCACTATGGGGAAGCCAAGAGATCAAACTGTGAGAGTGATTTGCGGGAAAGAACTGGAGCACAACACCACGGCCTACGTCCCTAACTTTTTTGGTTCCATGGAAAAAGTTAGACAACAAATCAGAACTTCCGGATTTGGAACGGCGGGGACAGGAATAGGACCTGATGCAAGCTATGGGCTTGCCCAATGCCATGAAGATCTCTCATCCCTCGAATGTGTGCTGTGTCATTCTCAAGCACGTACGGTGCTTCCCCAATGCTTCCCTTTCAACGGCGGCCGAGCATTCATCGATGGCTGCTTCCTGAGGTTCGAAAACTATAGCTTTTTTGATGAATATAAAGGACCCGAAGATACTGCAGTCTGCGGGAACTTGACCCAAAATGACCCCAACTATAGACAAGCAGCCAGGGATGCGGTGATGCAAGTGGTCAACGGTGCACCAGCCAGCAAAGGCTTTGCGAAAGCTCGAGTGGCTGTGGGGGGGATGGCGAATGAGTCTGCCGCTTATGCTCTGGGTCAGTGCTGGAGAAGTTTGAACCGCAGCTCTTGCAACTCATGTTTGCAAATCGCTTCTGCTTCGATGTTGCGGTGTTTGCCTCAATCGGAAGGGCGAGCATTGTACACAGGCTGCTTCATGAGATACTCGAACACAGACTTCCTCAATAAGGACATCGAAAATAGCTCCGGAGGTGGCACAAGAACAGAATTGATAGTTTCAATCTTGAGTTCTGTTGTTGTTTTGATAATCGGAGTGGCGATCGGTACTTATGTCTGGAAGCGCAGATACGTACAAAAGAAAAGGAAAGGAGGTTCTTCAACTGATGTGAAGAAGTTAGCAAAAACTCTTCAAGATAGTAACTTGGACTTCAAGTACTCAACCCTTGAAAAAGCTACCAACAATTTCAGCCTTGATAACAAGATTGGACAGGGGGGATTTGGCACTGTTTATAAGGGAACTCTACCTGATGGAAGAGAGATTGCTGTCAAGAGATTCTTCTTCGATAACAGACACAGAGCAGCTGATTTCTACAATGAAGTAAACATGATCAGCAGTGTCGAACATAAAAATCTGGTGAGGTTGCTTGGATGCAGTTGTTCTGGACCTGAAAGCCTACTTGTTTATGAATTTCTACCAAACAAGAGTCTGGATCGTTTCATTTTCGGTACCGATAACAGTAAAGCTCTTGATTGGGATAAGAGGTATAACATCATCATTGGAACGGTTGAAGGTTTAATATATCTACATGAAAATCCAAAGATCAAAATCATACATAGAGATATAAAGGCCAGTAATATCTTGCTGGATCTAAAGCTTCAAGCGAAAATAGCAGATTTTGGATTAGCAAGGTCTTTTCAAGAAAACAAGAGCCACATTAGCACCGCCATTGCAGGAACCCTAGGATATATGGCTCCAGAGTATCTAGCTTATGGTCAGTTAACAGAAAAGGCTGATGTCTATAGCTTTGGAGTGCTTTTGTTAGAAATTGTTACAGGAATCCAATATAGCGGCATTCAAGTCTCAGGAAACATTGAAAGTCTGATCACTGCTATGTGGAGACATTTCCAAGCAGGCACAGTTGAGAGGCTATTTGATCCAAATCTTAATCTTCAGAATCACTACAACAAGAAAGTAAAGGACGAGGTATTGAGAGTGGTGCACATAGGATTTTTATGCATCCAGGAGATTCCATCTCTACGACCAACAATGTCAAAGGTACTACGAATGCTGACCATGGAGGAGGAAGAGCACCTTCCTCCACCCACCAAACCACCCTTCATGGATGAGATGACCATGGAACTAGATGACTCGTGCAAGGACTCACAATATTATCCTATTACAGAGGGCTCTTCTTCAACTGCCACAGTCAGCCATAGTTCTTTTGTTCCTAGATAA 3669 46.03 MKTGSPLVSEYGLFIFITALLLLETSTVADPRSRTVKILCSTVLEHNTTAFVPNFVGTMQIISDQMRTGGFGVAVAGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYDEFKGPLDRAVCGNTSISNSIFGQSARQAVARAIDTAPNNGGYARLQVALPETPNASVYLLAQCWRNLNRSSCTSCLQNASASILKCLPRSEARALNTGCFMRYSNVDFLNAEPRAARSRGTIIEIIVSLVSSVAVLVVGVLIGIYFWNNRYINKKRRDRDRGRSLNWEKRFDIIVGTVEGLVYLHENSKTKIIHRDIKASNILLDSKLRAKIADFGLARSFEEDVSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVVLLETITGIQNSRSKTSDYLESIVLITWKHFQAGTVERIYDPNLMVDEKDEDGSMKEEILRVLHIGLLCTQESASLRPTMSKVLQMLMKKEERLPAPTNPPFMDERTMELNDTSEDPSYFNVTEGSSSAATVTHSSFHPRYGEGEGSLGNNCAKQLCSVEIGQRNQNPDSMAIQLVYASKYALFSVLAIPLLLASFTMGKPRDQTVRVICGKELEHNTTAYVPNFFGSMEKVRQQIRTSGFGTAGTGIGPDASYGLAQCHEDLSSLECVLCHSQARTVLPQCFPFNGGRAFIDGCFLRFENYSFFDEYKGPEDTAVCGNLTQNDPNYRQAARDAVMQVVNGAPASKGFAKARVAVGGMANESAAYALGQCWRSLNRSSCNSCLQIASASMLRCLPQSEGRALYTGCFMRYSNTDFLNKDIENSSGGGTRTELIVSILSSVVVLIIGVAIGTYVWKRRYVQKKRKGGSSTDVKKLAKTLQDSNLDFKYSTLEKATNNFSLDNKIGQGGFGTVYKGTLPDGREIAVKRFFFDNRHRAADFYNEVNMISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFGTDNSKALDWDKRYNIIIGTVEGLIYLHENPKIKIIHRDIKASNILLDLKLQAKIADFGLARSFQENKSHISTAIAGTLGYMAPEYLAYGQLTEKADVYSFGVLLLEIVTGIQYSGIQVSGNIESLITAMWRHFQAGTVERLFDPNLNLQNHYNKKVKDEVLRVVHIGFLCIQEIPSLRPTMSKVLRMLTMEEEEHLPPPTKPPFMDEMTMELDDSCKDSQYYPITEGSSSTATVSHSSFVPR 1222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 29861599 29876264 - Maker00025592 Lcy13g1270 651575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1270 1222 FunFam Cysteine-rich receptor-like protein kinase 2 33 134 - -
Lcy13g1270 1222 Gene3D - 33 134 IPR038408 -
Lcy13g1270 1222 Gene3D - 710 811 IPR038408 -
Lcy13g1270 1222 Gene3D - 144 244 IPR038408 -
Lcy13g1270 1222 Gene3D - 600 700 IPR038408 -
Lcy13g1270 1222 ProSiteProfiles Gnk2-homologous domain profile. 705 811 IPR002902 -
Lcy13g1270 1222 SMART serkin_6 893 1170 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1270 1222 MobiDBLite consensus disorder prediction 1202 1222 - -
Lcy13g1270 1222 Pfam Protein kinase domain 304 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1270 1222 Pfam Protein kinase domain 894 1166 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1270 1222 ProSitePatterns Serine/Threonine protein kinases active-site signature. 328 340 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1270 1222 FunFam Cysteine-rich receptor-like protein kinase 3 143 244 - -
Lcy13g1270 1222 SUPERFAMILY Protein kinase-like (PK-like) 877 1188 IPR011009 -
Lcy13g1270 1222 FunFam Cysteine-rich receptor-like protein kinase 2 283 491 - -
Lcy13g1270 1222 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Lcy13g1270 1222 Gene3D Transferase(Phosphotransferase) domain 1 285 494 - -
Lcy13g1270 1222 Gene3D Transferase(Phosphotransferase) domain 1 969 1177 - -
Lcy13g1270 1222 FunFam Putative DUF26-domain receptor-like protein kinase family protein 863 968 - -
Lcy13g1270 1222 FunFam Cysteine-rich receptor-like protein kinase 2 599 700 - -
Lcy13g1270 1222 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Lcy13g1270 1222 ProSiteProfiles Protein kinase domain profile. 151 499 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1270 1222 Gene3D Phosphorylase Kinase; domain 1 853 968 - -
Lcy13g1270 1222 FunFam Cysteine-rich receptor-like protein kinase 2 969 1176 - -
Lcy13g1270 1222 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1014 1026 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1270 1222 ProSiteProfiles Gnk2-homologous domain profile. 599 700 IPR002902 -
Lcy13g1270 1222 Pfam Salt stress response/antifungal 48 132 IPR002902 -
Lcy13g1270 1222 Pfam Salt stress response/antifungal 713 808 IPR002902 -
Lcy13g1270 1222 Pfam Salt stress response/antifungal 613 698 IPR002902 -
Lcy13g1270 1222 Pfam Salt stress response/antifungal 147 241 IPR002902 -
Lcy13g1270 1222 SUPERFAMILY Protein kinase-like (PK-like) 298 484 IPR011009 -
Lcy13g1270 1222 ProSiteProfiles Protein kinase domain profile. 893 1170 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1270 1222 FunFam Cysteine-rich receptor-like protein kinase 3 709 811 - -
Lcy13g1270 1222 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 748 1200 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lcy13g1270 1222 ProSitePatterns Protein kinases ATP-binding region signature. 899 921 IPR017441 GO:0005524(InterPro)
Lcy13g1270 1222 CDD STKc_IRAK 899 1169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0192 Lcy-Chr10:2743993 Lcy13g1270 Lcy-Chr13:29861599 2.00E-146 dispersed
Lcy13g1270 Lcy-Chr13:29861599 Lcy5g1982 Lcy-Chr5:42755047 1.30E-122 dispersed
Lcy13g1270 Lcy-Chr13:29861599 Lcy5g1147 Lcy-Chr5:24670694 2.25E-76 wgd
Lcy13g1270 Lcy-Chr13:29861599 Lcy7g0161 Lcy-Chr7:1450383 8.16E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65571 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1270 - - - 0.0