Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1301 CAAACTTCAAGCCCCATTCTGAAAAGGCATCAGCAGATCAAGGCAGAGCGAAAGTACGAACTGACCCTTCTTGTTCTGTACCACACAGAGCAGAATAAACCCATAAATCCTCGCGATATACCGAAGGGCATAATGAGGCTCTGCTTCTATTCCCTTGCAAGAGCTCAATACGAGCTGCAGGAGCTTGTTTTTCAAGAAACTGAACAGTTTCTTTTGATTTTATCCACTCTTCTGCCAGTGTTTCGATTCGAAAACATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCATGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCTCAGGCTTTTCAAGCAGAGGGAAAAGTGTCTTCGGATCCTGTGGCTATTGATGCGCCTGGAGGTTTTCTGTTCGAATGGTGGTCGGTATTCTGGGATATATTCATTGCTAGGACTAATGACAAGCACTCTGATGTTGCTGCATCTTATATCGAGACACAATTAATAAAAGCAAGAGAGCAACAGCAACATCAGCAACATCAACAACAACAGCAGCAGCAACCACAGCCACAACAACAGCAACCACAACACATGCAGATGCTTCTGATGCAGAGACATGCCCAACAGCAGCAGCAGCAACAACAGCAACAACATCAGCAGCAACAGCAGCCACAGCAGCAACAACAACAGACACAGCAACAGCAACAGCAGCGAAGAGATGGAGCTCAGCTCTTAAATGGAACTTCAAATGGTTTTGTTGGAAATGATCCTCTTATGCGCCAGAATCCTGGATCTGTAAATGCATTGGCTACAAAAATGTATGAGGATAGATTAAAACTGCCCCATCAGAGGGATTCTCTGGATGACGCGGCTATGAAAGTAGCAAAGATACGGGGAAAATGTTGGGCAGCTGTTGGACCCAAATCATGCTTCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGTGCTTTTCTTGCAAGTATTACATGGTACAGCCGGGGGAATGTCTCCTCAAGTTCAGTCTAGGAGCCAGCAATTGCCAGGTTCCACACCGGATATAAAGACCGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGTCCTGAGGGTTCACTGATGGGCATTCCCGGATCAAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCCCTCGCTGGATTAGAGCAGCTCCGTTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTCCTCAGCCTTTTCCTCAGCTTCAGATGTTGACACCACAACACCAACAACTTATGCTCGCACAACAGAATTTAACATCACCTTCTGTTAATGACGATGGTAGAAGATTGAGAATGCTTTTGAACAGTCGAATTGCAAAAGATGGACTTTCAAACTCTGTTGGTGATGTTGTTCCAAGTGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTTTTGCCACGCGGAGACAACACAGACATGATCATGAAGATAAAAATGGCTCAATTACAGCATCAACAACAGCAGCAACAGAATAGTAGCCAGCAAATGCAGCAGCAGCAGCAGCAACTTCAGCAACATGCTCTTTCAAATCAACAATCACAAAGCTCAAACCACAATATGCATCAGCAAGAAAAAATTGGGGGTGCTGGCAGTGCCACCATGGATGGTAGCATGTCAAACTCATTTCGTGGAAATGACCAGGTTTCAAAAAATCAAACTGGGAGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCAGCAAATAGCTCAGGAACAGCAAATACAGCAGGGCCGTCCCCTAGTTCTGCTCCCTCAACTCCCTCAACTCACACACCTGGTGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTCAGCAGTGATGGCACTGGCACTTTTACATCCCCCTCAAATCAGTTGTGGGATGATAAAGAACTTGAATTGCAGGCTGATATGGATCGCTTTGTGGAGGATGGGTCTCTTGATGATAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATCCTGTAGGCCGCTGTATGGATGGCAGCAAAGGGTTCACATTTACGGAGGTGCATTCTGTTAGAGCAAGCTCAGGCAAAGTCTCCTCTTGCCACTTTTCATCTGATGGAAAACTGCTTGCGAGTGGTGGCCATGATAAAAAGGCTGTATTATGGTACACAGAAAATTTGAAGCCGAAAACTTCACTTGAAGAACATGCTTCTATGATCACCGATGTTCGTTTTAGTCCTAGCATGCCTCGTCTTGCAACATCTTCATTCGACAGAACCGTCAGGGTTTGGGATGCCGACAATCCTTGTTATTCTCTACGTACTTTTACGGGGCATTCTGCTTCTGTTATGTCTTTGGACTTCCATCCGAAGAAGGATGACCTTGTCTGCTCTTGCGATAGCGATGGTGAGATTCGATACTGGAATATAACTAATGGCAGCTCTGCAGGAGTATTCAAGGGTGGTACAGGTCAGCTGAGATTTCAACCTCGTCACGGAAGGTACTTTGGTGCTGCTATAGATAATGTCGTATCCATTTTTGATGTCGAGACACAAACACGTCTGCATACACTACAGGGACATAGCAAAACGGTTCATTCTCTTTGCTGGGATCCTTCTGGAGAGTTCCTGGCATCCGTTAGTGAGGATTCTGTTCGAGTATGGACGCTTGCTTCTGGGAGTGAGGGCGAAACCATTCACGATTTGAGCTGTAACGGCAATAAGTTCAACTCTGTCGTTTTTCATCCCACCTATTCTACTTTGCTCGTCATTGGATGTTACCAGGCAAAGCTTTGGAACACGACTGAGAACAAGACGATGACTCTATCAGCTCATGAAGGTTTAATATCTGCCTTAGCAGTGTCCACAGCATCGGGTCTAGTTGCTTCGGCCAGCCATGACAGGTTTATCAAGCTGTGGAAGTAA 2976 45.46 QTSSPILKRHQQIKAERKYELTLLVLYHTEQNKPINPRDIPKGIMRLCFYSLARAQYELQELVFQETEQFLLILSTLLPVFRFENMSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNDKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQPQPQQQQPQHMQMLLMQRHAQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGTSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPHQRDSLDDAAMKVAKIRGKCWAAVGPKSCFNSEVSCSNQPVLRVLFLQVLHGTAGGMSPQVQSRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLAGLEQLRSGILQQQKPFIQAPQPFPQLQMLTPQHQQLMLAQQNLTSPSVNDDGRRLRMLLNSRIAKDGLSNSVGDVVPSVGSPLQAGSPLLPRGDNTDMIMKIKMAQLQHQQQQQQNSSQQMQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSATMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKELELQADMDRFVEDGSLDDNVESFLSHDDTDPRDPVGRCMDGSKGFTFTEVHSVRASSGKVSSCHFSSDGKLLASGGHDKKAVLWYTENLKPKTSLEEHASMITDVRFSPSMPRLATSSFDRTVRVWDADNPCYSLRTFTGHSASVMSLDFHPKKDDLVCSCDSDGEIRYWNITNGSSAGVFKGGTGQLRFQPRHGRYFGAAIDNVVSIFDVETQTRLHTLQGHSKTVHSLCWDPSGEFLASVSEDSVRVWTLASGSEGETIHDLSCNGNKFNSVVFHPTYSTLLVIGCYQAKLWNTTENKTMTLSAHEGLISALAVSTASGLVASASHDRFIKLWK 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 30493718 30502480 + Maker00025508 Lcy13g1301 651606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1301 991 SMART Lish 93 125 IPR006594 GO:0005515(InterPro)
Lcy13g1301 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 708 749 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 ProSitePatterns Trp-Asp (WD) repeats signature. 769 783 IPR019775 -
Lcy13g1301 991 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 750 785 - -
Lcy13g1301 991 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 959 991 - -
Lcy13g1301 991 MobiDBLite consensus disorder prediction 554 614 - -
Lcy13g1301 991 Gene3D - 650 838 IPR015943 GO:0005515(InterPro)
Lcy13g1301 991 Gene3D - 839 991 IPR015943 GO:0005515(InterPro)
Lcy13g1301 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 793 835 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 Pfam LisH 95 121 IPR006594 GO:0005515(InterPro)
Lcy13g1301 991 SMART WD40_4 868 906 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 SMART WD40_4 701 740 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 SMART WD40_4 829 865 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 SMART WD40_4 952 991 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 SMART WD40_4 912 950 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 SMART WD40_4 743 782 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 SMART WD40_4 786 826 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 959 991 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 MobiDBLite consensus disorder prediction 465 635 - -
Lcy13g1301 991 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 793 831 - -
Lcy13g1301 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 875 915 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 MobiDBLite consensus disorder prediction 171 264 - -
Lcy13g1301 991 ProSiteProfiles LIS1 homology (LisH) motif profile. 93 125 IPR006594 GO:0005515(InterPro)
Lcy13g1301 991 Coils Coil 500 523 - -
Lcy13g1301 991 CDD WD40 704 991 - -
Lcy13g1301 991 PANTHER TRANSCRIPTION ACTIVATOR MSS11 85 991 - GO:0005634(PANTHER)
Lcy13g1301 991 MobiDBLite consensus disorder prediction 501 547 - -
Lcy13g1301 991 Pfam WD domain, G-beta repeat 789 826 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 Pfam WD domain, G-beta repeat 956 990 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 Pfam WD domain, G-beta repeat 704 739 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 Pfam WD domain, G-beta repeat 870 905 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 Pfam WD domain, G-beta repeat 745 782 IPR001680 GO:0005515(InterPro)
Lcy13g1301 991 SUPERFAMILY WD40 repeat-like 701 991 IPR036322 GO:0005515(InterPro)
Lcy13g1301 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 750 785 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1301 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1767 Lcy-Chr11:41472894 Lcy13g1301 Lcy-Chr13:30493718 4.53E-165 dispersed
Lcy13g1301 Lcy-Chr13:30493718 Lcy2g0790 Lcy-Chr2:6994558 1.19E-126 dispersed
Lcy9g0552 Lcy-Chr9:17281532 Lcy13g1301 Lcy-Chr13:30493718 7.27E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g426 . . . . . . . . Cmo05g00686 . . Cma05g00654 . . Sed01g1339 Cpe07g00273 . Bhi04g01022 Tan02g2682 Cmetu03g2197 . Hepe10g0285 . Lcy13g1301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00598 Cpe11g00581 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19386 None None None None Lcy TR