Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1313 ATGGACGTTCCCTCAGTGGAACTAAATTGTGAAAGCGAAGGAGACTCTTGCCCTTTATTAATGGCCCGGCCAGAAAATTCTAGCAGCAGTGAGCATATCATTGACATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGGTAGGAATTCAAATGGCTTAAATTCATCACAACCTGAAGATAGACCTTCAAGTAGTACACGAGTTCCATTGTCTCAACCTTCAATTTCTTCTACTGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCTCGACGTCGCAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCTCGAGCACCTTTGTTTGCATGGATTGTGGGATATGCATCGGGATGTGGTGCCACCCTTCCTCTTCTCTATTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAAGATTCTCTTCAATCCAGTCAGAATTCTACTCGCATTAATGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCAGCATCCTGCCCCATCCTCCAGAACCAGTCAAGGGTCAGGAGTACTGACAGCAAGATTAAAAGTATTGGTTGAATATTTTAAGATGGGCTTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACCCGAGGAGCCACAACAGAATCTATTAATGCATTACCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGAGATGATAGAGAAAACAACTACGGGACTGGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCAAAATACGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTCCACAAGGATTGTGTAGATAAATGGTTGAAGATCAACGCACTGTGCCCACTTTGCAAAACCGAGGTCGGTGAGAGTATCATCGGCTCTCTTGAGGGGACAAATAGACAACAACAGGGTGATTAA 1278 42.96 MDVPSVELNCESEGDSCPLLMARPENSSSSEHIIDITGTGDSAPSSLPHGRNSNGLNSSQPEDRPSSSTRVPLSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQNSTRINVPAGPFSLSVSRASEGEELQHPAPSSRTSQGSGVLTARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATTESINALPTYKFKLKKSRSGDDRENNYGTGEGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEVGESIIGSLEGTNRQQQGD 425
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 30772176 30781625 + Maker00025689 Lcy13g1313 651618
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1313 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 408 - -
Lcy13g1313 425 SMART ringv_2 362 404 IPR011016 GO:0008270(InterPro)
Lcy13g1313 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 411 IPR013083 -
Lcy13g1313 425 FunFam E3 ubiquitin-protein ligase 346 412 - -
Lcy13g1313 425 MobiDBLite consensus disorder prediction 1 96 - -
Lcy13g1313 425 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Lcy13g1313 425 Pfam Ring finger domain 363 404 IPR001841 -
Lcy13g1313 425 SUPERFAMILY RING/U-box 355 409 - -
Lcy13g1313 425 SMART ring_2 363 403 IPR001841 -
Lcy13g1313 425 MobiDBLite consensus disorder prediction 22 90 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1227 Lcy-Chr10:34911649 Lcy13g1313 Lcy-Chr13:30772176 4.02E-11 dispersed
Lcy13g1313 Lcy-Chr13:30772176 Lcy9g1080 Lcy-Chr9:34675033 5.18E-50 dispersed
Lcy13g1313 Lcy-Chr13:30772176 Lcy1g1757 Lcy-Chr1:18671271 1.28E-35 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1313 - - - 0.0