Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1316 ATGGCTGTCAAAACAGCGCAATCGTTTAGAGATCGGACGCAGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGCGCGGGGACAACTGGACCAAGTGGTGGTACAAAATCAGAAGAGCAGCGCTCTGTTGTGGCTCTTCAGTCTGAATTCAATAAGAGGGCTTCCAAGATTGGGTTAGGGATTCATCAGACGTCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCACTTATTAAGCAGGACATTACAACATTGAACTCTGCAGTTGTAGATCTTCAGCTTCACTGCAACTCTAGAAATGAAAGTGGAAACATGTCCAGTGATACTACGAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACTACAAAAGAATTTAAAGAAGTCCTAACCATGAGAACAGAAAATTTGAAGGTTCATGAGAACCGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTGCGCCAACGCCCATTAGCTTCTAGGTCAACTGCTGGTGCCTCAAGCGCACCCCCTCCTCCGTGGGCCAAGGCATCTACATCTTTTTCCAAAACATCTCCCGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGTTACAGCAGCAGCAGCAGCAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAGAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTTAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGTTCTACCCTCATGCACCCATTTCAGAATTGCTGATTATATGA 900 44.0 MAVKTAQSFRDRTQEFQNITERLKKSFSSGAGTTGPSGGTKSEEQRSVVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLHCNSRNESGNMSSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSTAGASSAPPPPWAKASTSFSKTSPGKQVDGESQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRFYPHAPISELLII 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 30789929 30795629 - Maker00025460 Lcy13g1316 651621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1316 299 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 283 IPR000727 -
Lcy13g1316 299 MobiDBLite consensus disorder prediction 21 46 - -
Lcy13g1316 299 MobiDBLite consensus disorder prediction 168 242 - -
Lcy13g1316 299 SUPERFAMILY t-snare proteins 52 283 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lcy13g1316 299 Gene3D - 50 286 - -
Lcy13g1316 299 PANTHER SYNTAXIN 54 284 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy13g1316 299 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Lcy13g1316 299 MobiDBLite consensus disorder prediction 170 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1316 Lcy-Chr13:30789929 Lcy7g0975 Lcy-Chr7:10033213 2.12E-62 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1316 K08490 - csv:101203633 460.299