Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1342 ATGGGCGGCGATAAGGCCATCACTCTCGAGGAGATTAAAAACGAGGCCGTTGATCTGGAACATATTCCAATAGAGGAAGTGTTTGAACAGTTGAAATGTACACGAGAAGGTCTGACATCAGAGGAAGGAGCCCACCGGCTTCAAGTTTTTGGACCCAACAAACTAGAAGAGAAGAAGGAAAGCAAAATTCTCAAGTTTTTGGGTTTCATGTGGAATCCTTTATCATGGGTCATGGAAGCTGCTGCCTTAATGGCAATAGTCTTGGCAAATGGTGGTGGAAGACCACCGGACTGGCAAGACTTTGTGGGGATCATTGCTTTACTTTTTATCAACTCTACCATTAGTTTTATTGAAGAAAACAATGCCGGTAACGCGGCTGCTGCACTCATGGCTGCAACAGTTCTTGCAAGATTACTGAAGCAACTGAACGTCTTGCAACTTTCTTCCAAGCAGATCCTAAATCTTTGCAACTCCAGGGAAGACATTAGAAGAAAGGTTCATTCAGTGATTGACAAGTTTGCAGAACGTGGACTTCGTTCACTGGGTGTTGCAAGACAGGAAGTACCTGAAAAATCAAAAGATAGCCCTGGAGGACCATGGCAGCTTGTTGGTTTGTTGCCTCTATTTGATCCTCCTAGGCATGATAGTGCAGAAACCATAAGAAGAGCTCTGAATCTCGGAGTAAATGTCAAAATGATTACCGGGGATCAACTTGCCATTGCCAAGGAAACAGGGCGTAGACTTGGTATGGGAACAAATATGTACCCTTCCTCATCATTACTTGGTCAAGACAAGGATGAATCTATTGCTTCACTTCCTGTGGATGAGTTGATTGAGAAGGCAGATGGGTTTGCTGGAGTATTTCCAGAACACAAATATGAAATTGTGAAAAGGCTGCAGGAAAGGAAACATATATGTGGAATGACAGGAGATGGTGTTAATGATGCTCCTGCTTTGAAGAAGGCAGATATTGGAATTGCTGTTGCTGATGCTACTGATGCTGCCAGAAGTGCTTCGGATATTGTCCTTACAGAACCAGGATTGAGTGTAATTATTAGTGCGGTGCTAACCAGCAGGGCTATTTTCCAGAGGATGAAGAATTACACGATTTATGCAGTTTCAATTACAATTCGTATAGTGTTTGGCTTCATGTTCATTGCTTTGATTTGGAAGTTCGATTTCGCTCCCTTCATGGTTTTAATAATAGCCATTCTGAATGATGGAACAATCATGACAATTTCAAAGGATCGAGTAAAGCCATCTCCACAGCCTGATAGTTGGAAACTGAAGGAGATTTTTGGAACTGGCATTGTGCTTGGAGGATACCTGGCACTAATGACAGTACTATTCTTTTGGGCTGTTAAAGATACAAACTTTTTCTCAGAAAAATTCCATGTGAAACCCTTGAAGGATAGTCCTCAAGAACTGATGGCAGCCTTGTATCTACAAGTCAGCATAATAAGTCAGGCCCTTATTTTTGTCACAAGGTCTCGCAGCTGGTCATACATGGAACGTCCTGGACTCCTCCTAGTGAGTGCTTTCATCATTGCTCAGCTGGTGGCAACTGTGATAGCTGTTTATGCAAACTGGGGTTTTGCAAGGATCAAAGGAATGGGATGGGGATGGGCTGGTGTTATCTGGCTGTACAGCTTGGTAACATATATCCCTCTCGACATTTTGAAATTTGGAATCCGGTATGCCCACAGTGGCAAGGCTTGGGACACTCTTCTGGAGAACAAGACTGCCTTCACAACCAAAAAGGACTATGGCAAAGAAGAGAGAGAAGCACAGTGGGCGGCTGCACAGAGGACTCTACATGGTCTACAACCACCTGAAAACTCCAATCTCTTCCCTGAGAAAAGTAGTTACAGGGAGCTTTCTGAGATTGCAGAGCAAGCCAAGCGCCGTGCTGAGGTTGCCAGGCTTCGAGAGTTGCATACACTTAAGGGTCATGTTGAATCAGTGGTGAAGCTGAAAGGATTGGACATTGATACAATTCAACAACACTATACAGTTTAA 2019 43.64 MGGDKAITLEEIKNEAVDLEHIPIEEVFEQLKCTREGLTSEEGAHRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIVLANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAATVLARLLKQLNVLQLSSKQILNLCNSREDIRRKVHSVIDKFAERGLRSLGVARQEVPEKSKDSPGGPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDESIASLPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFGTGIVLGGYLALMTVLFFWAVKDTNFFSEKFHVKPLKDSPQELMAALYLQVSIISQALIFVTRSRSWSYMERPGLLLVSAFIIAQLVATVIAVYANWGFARIKGMGWGWAGVIWLYSLVTYIPLDILKFGIRYAHSGKAWDTLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPENSNLFPEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 31378114 31386232 + Maker00025675 Lcy13g1342 651647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1342 672 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 568 IPR023298 -
Lcy13g1342 672 Gene3D - 200 272 IPR023214 -
Lcy13g1342 672 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Lcy13g1342 672 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Lcy13g1342 672 PRINTS P-type cation-transporting ATPase superfamily signature 309 328 - -
Lcy13g1342 672 PRINTS P-type cation-transporting ATPase superfamily signature 332 344 - -
Lcy13g1342 672 PRINTS P-type cation-transporting ATPase superfamily signature 204 215 - -
Lcy13g1342 672 PRINTS P-type cation-transporting ATPase superfamily signature 226 236 - -
Lcy13g1342 672 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 151 215 IPR023299 GO:0000166(InterPro)
Lcy13g1342 672 Gene3D - 310 567 - -
Lcy13g1342 672 Gene3D - 69 156 - -
Lcy13g1342 672 PRINTS H+-transporting ATPase (proton pump) signature 481 502 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy13g1342 672 PRINTS H+-transporting ATPase (proton pump) signature 340 365 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy13g1342 672 PRINTS H+-transporting ATPase (proton pump) signature 309 325 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy13g1342 672 PRINTS H+-transporting ATPase (proton pump) signature 166 184 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy13g1342 672 PRINTS H+-transporting ATPase (proton pump) signature 281 297 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy13g1342 672 FunFam Membrane H(+)-ATPase1 149 209 - -
Lcy13g1342 672 NCBIfam HAD-IC family P-type ATPase 284 399 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy13g1342 672 Coils Coil 623 643 - -
Lcy13g1342 672 FunFam ATPase 4 plasma membrane-type 293 536 - -
Lcy13g1342 672 PANTHER CALCIUM-TRANSPORTING ATPASE 150 596 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lcy13g1342 672 Pfam haloacid dehalogenase-like hydrolase 179 323 - -
Lcy13g1342 672 SUPERFAMILY HAD-like 201 355 IPR036412 -
Lcy13g1342 672 Gene3D - 621 672 - -
Lcy13g1342 672 FunFam Plasma membrane ATPase 202 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1342 Lcy-Chr13:31378114 Lcy2g0298 Lcy-Chr2:2384611 0 dispersed
Lcy13g1342 Lcy-Chr13:31378114 Lcy9g1775 Lcy-Chr9:42936955 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1342 K01535 - csv:101213505 994.571