Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1343 ATGGAGAGCGATATCGAAGAATCATTCAAGAAGAAAGCGAGAAAGAATCCGCACCATGGCGAATCTTCTCGAAAGCTTGGGTTTCTGTTTACCTCGAGACTTGATTCTGTGATCACTTTTTATGATCTGAAGTCTCCAAGTGTAGTTTTTTGCATGCATCAGCCTCTTCAGAAGTATCATCTAGAACTTCAGTTTTCCAGTTTTCGGGTTTTGAGGATTCCTGTAAGTTTCGTTCCACCGATAACAAGAGTGGAGTCCTTATGGAAGAAGGCCATACTTGCTCACTGCAATCTTATGCTACAAAGAACTGATAGTAGCTCTTTTGCAGTTTCAAATGTCCTCAAAAGGCATAGTGATTTATCCGAGCGTCTCTCCAGGGATTCTGACAAGATGATTTTTGAGCGCTTACAAAAAGAATTTGAAGCTGCTAGAGCATCTGAGACTCAAGAAGTATATTTGGATGGTGAACAATGGAATGATGGACTTTTAGCAACAATAAGAGAGCGGGTTCATATGGAAGCAGAGAGAAAGGCCATGCCTGAGGAAGCAGATATGTTGCCACAGGAAAAAATCACCTATAAAGTTGGAACCAAGGTTATTTGCTGCTTGGAAGGAGCGAGGATTGGCATACAATATGAGACATCTTTTGCAGCTCAGTTGACAAAGGCGTTGGCTCCAGTCTTTGATCTTCGACTTCGCGAACTGGAAATTCCTCTGTTTTCGGGATTAAATCCGTATGAGTGGCTTCACCAAGTCGAGCGATACTTTGTGGTGAATCGTATGACAGATTCAGCGAAAGTCGAGGCGGCCGTTCTTTGTCTTGATGGTGTCAAGTTCCTATCAGTTTCATTTAGTGCTGGTGATCCCTGTGAACTTTATCATTGCGTGCTTGAAAGCAAGTCATTTCTTGAAAAGATGACTGTCCTAGAACACACAATTCCATTCTTTCTGCCAGTACGAGAAGCAGAAAATGATCTTCTCTCCTCTAACGCAATGAAATTTATAGATCATATTGGAGAACTTTTGCAGGCCTATGTGGATAGAAGGGAACAGACCCCTGTGCATGTTCAAGTTAAGATGGCGTTGAAGTATTTCTTCCCTTTGTATGCTTTTACCCACTTCTTGGCAAGTATAAATGTTGGCATTACCTGGCCTGTTGGTTGTGCTAAAGTTCACCAACTTCTTTTGATGATGATTGTAGGGGAGAGCTGCATCTTCCATACTCACAAAGAGAAGGTTTATGTTTTGTGTTCACAAATCATTCAGGTTCGGCTTATCAAGGAGTTGTATGGAAACCAAATCAGGGAGTTGTATCACAGCCTTCCATTCCATATGATTGAATTTGTGCTAGATGATTCTGACTGCACAGTGACTGTCAGTCTGAGATACGCAGATCTTATCTATGTGCTGCCGTCTGAAATTAGCGTGCTTGCATGGCCAATGCCCCAGATGAAGAAAAATACCATAAATTCATCAATCTTGAGCATCAAGAAGGAAAATGGAGGAACTGTAGTTCATCCTATTCCAGCTCGTCTATCATATGCAGAGGATGCTTTACGAACCATGAGCTTACCAGAAGCATATGCAGAGATCGTGTTGAATTTGCCCCGAGCTATACAACAGATGTTTCCGCCAAAACCTCACACATAG 1650 42.06 MESDIEESFKKKARKNPHHGESSRKLGFLFTSRLDSVITFYDLKSPSVVFCMHQPLQKYHLELQFSSFRVLRIPVSFVPPITRVESLWKKAILAHCNLMLQRTDSSSFAVSNVLKRHSDLSERLSRDSDKMIFERLQKEFEAARASETQEVYLDGEQWNDGLLATIRERVHMEAERKAMPEEADMLPQEKITYKVGTKVICCLEGARIGIQYETSFAAQLTKALAPVFDLRLRELEIPLFSGLNPYEWLHQVERYFVVNRMTDSAKVEAAVLCLDGVKFLSVSFSAGDPCELYHCVLESKSFLEKMTVLEHTIPFFLPVREAENDLLSSNAMKFIDHIGELLQAYVDRREQTPVHVQVKMALKYFFPLYAFTHFLASINVGITWPVGCAKVHQLLLMMIVGESCIFHTHKEKVYVLCSQIIQVRLIKELYGNQIRELYHSLPFHMIEFVLDDSDCTVTVSLRYADLIYVLPSEISVLAWPMPQMKKNTINSSILSIKKENGGTVVHPIPARLSYAEDALRTMSLPEAYAEIVLNLPRAIQQMFPPKPHT 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 31386595 31406808 - Maker00025678 Lcy13g1343 651648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1343 549 MobiDBLite consensus disorder prediction 1 22 - -
Lcy13g1343 549 PANTHER INNER KINETOCHORE SUBUNIT MAL2 107 351 IPR018464 GO:0000776(InterPro)|GO:0031511(PANTHER)|GO:0034508(InterPro)
Lcy13g1343 549 Pfam Cenp-O kinetochore centromere component 282 351 IPR018464 GO:0000776(InterPro)|GO:0034508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1343 K11507 - - csv:101206507 244.202
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1343 Lcy-Chr13:31386595 Lcy12g2228 Lcy-Chr12:43462384 1.12E-20 dispersed
Lcy13g1343 Lcy-Chr13:31386595 Lcy13g1349 Lcy-Chr13:31526222 1.08E-19 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g203 . . . . . . . . . . . Cma05g00631 . . Sed03g1540 . . Bhi04g01080 Tan02g2627 Cmetu03g1566 . Hepe10g0316 . Lcy13g1343 . . . . . . . . Cone7ag1761 . . . . . . . Blo18g00055 . Bda13g01295 . . Bma01g01310 Bma02g00052 . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01191 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003905 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 9 1 45