Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1355 ATGACGGCACCGGTGTCGGTTGATGGGAAGGGGAAGAGCAATATTGAGAATTTGGTGTCGGCTACTAGGTCGTTGAAGGCTAGTTTAGAGAAATCTAGGGCTTTAGGGTTTGCGTTGCAGAAAGCTGGGCCGAGATTGGAGGAGATTAGCCAACGATTGCCGACTTTAGAAGCGGCTGTCCGGCCTATTCGTGCTGATAAGGAAGCTCTCGTCGCCGTCGGTGGCCATATAAATCGGGCTGTTGGCCCGGCCGCGGCGGTGCTTAAGGTTTTTGATGCGGTTCATGGCCTTGAAAAGTCTCTGTTATCGGACCCAAGAAATGATCTGCCTGGTTATTTGTCGGTGTTGAAACGTATGGAAGAGGCATTGAGGTTTTTGGGAGATAACTGTGGACTGGCAATCCAATGGTTGGAGGATATAGTTGAGTATTTGGAAGACAATACTGTTGCTGACGAGAGATATCTTGCAAATTTGAAGAAGTCGTTGAAAAATCTGAGGGATTTGCAGAGTGATGAGGAGAGGACTCGGCTTGATGGGGGGCTTTTGAATGCTGCTTTAGACAAACTAGAGAATGAGTTTAGGCGTCTTTTAATGGAGCACAGTGTGCCTCTTCCTATGTCTTCTTCTCCTTCTCTTGGCGAGCAAGCTTGCATTGCCCCATCTCCATTGCCTGTGACTGTTATTCAGAAATTGCAGGCCATTCTTGGGAGATTGATTGCTAATAAAAGGCTTGAGAGATGCATATCCATTTATGTCGAAGTTCGTAGTTCTAATGTTAGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCGGTTTCCGAGTTCAATGACGTGCAGAGCATTGAGGGGTACATTGCAAAATGGGGCAAGCATTTGGAGTTTGCTGTGAAACACTTGTTTGAGGCTGAGTTTAAGCTTTGTAATGATGTTTTTGAGAGGATAGGATTGGATGTTTGGATGGGCTGTTTTGCAAAGATAGCGACTCAAGCAGGTATTCTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAGAGCAAGAATGATCCTATTAAGCTATTGAAGTTGTTAGATATATTTGCATCTTTGAACAAACTGAGACTGGACTTTAATAGGCTTTTTGGCGGGACTGCATGTTTGGAAATTCAAAATCTGACTCGGGATCTCATTAAGAGGGTTATTGATGGTGCGGCCGAGATTTTCTGGGAACTTTTAGTTCAGGTGGAGTTACAGAGGCAAAATTCTCCACCTTTAGATGGGGCAGTTCCAAGGTTGGTTAGCTTCATTATTGATTACAGCAATAAATTACTCAGTGATGATTATCGACCGATCCTGACCCAGGCCCTTGTCATTCACCGAAGTTGGAAGAAAGAAAAGTTCCAAGAGGGTCTTCTTATCAGTGAGGTTACAAACCTTGTTAAAGCCATTGAGCAGAATCTGGAAACTTGGATAAAGGCTTATGAAGATTCTACCTTGGCAAATTTTTTCGCTATGAACAATCATTGGCATCTATACAAGCACCTCAAAGGAACAAAAGTCGGAGAACTAATGGGAGAGAAATTAAAGGAACACGAACAATACAAGGATTACTATGCTGCAGTTTTCTTGAGGGATAGCTGGAGTAAACTTCCTAGCCACTTAAGCAGGGAGGGTTTAATTATGTTCTCAGGTGGGCGAGCTACTGCACGCGACCTCGTTAAGAAACGTCTAAAGTTATTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAATCAAACTGGGTTATGACTGACAAAGAATTGAGGGAGAAGACGTGCCAACTTATAGTTCAAACCATCGTGCCTGTATATCGCAGCTATATGCAGAATTATGGCCCCCTCGTCGAGCAAGATGCAAGTTCCAGTAAGTATGCGAAATACACCGTGCAGAATCTGGAGAAAATGTTACTGTCTCTTTTTCAGCCTAAGCCACTTAGGTTCAGCAGCCTTAAAGTTAGGCAGACTAGTGGGAAATTCAGCAATGGCGCAGCAGATCATCGGCGTTCCAACTCCATGGTTATGTAA 2049 43.68 MTAPVSVDGKGKSNIENLVSATRSLKASLEKSRALGFALQKAGPRLEEISQRLPTLEAAVRPIRADKEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADERYLANLKKSLKNLRDLQSDEERTRLDGGLLNAALDKLENEFRRLLMEHSVPLPMSSSPSLGEQACIAPSPLPVTVIQKLQAILGRLIANKRLERCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVQSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGTACLEIQNLTRDLIKRVIDGAAEIFWELLVQVELQRQNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLISEVTNLVKAIEQNLETWIKAYEDSTLANFFAMNNHWHLYKHLKGTKVGELMGEKLKEHEQYKDYYAAVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKLFNEAFEDMYKKQSNWVMTDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKYTVQNLEKMLLSLFQPKPLRFSSLKVRQTSGKFSNGAADHRRSNSMVM 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 31596450 31598498 - Maker00025530 Lcy13g1355 651660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1355 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
Lcy13g1355 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 26 650 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Lcy13g1355 682 Gene3D Exocyst complex component Exo70 135 654 - -
Lcy13g1355 682 Coils Coil 155 175 - -
Lcy13g1355 682 Pfam Exocyst complex component Exo70 N-terminal 82 197 - -
Lcy13g1355 682 FunFam Exocyst subunit Exo70 family protein 137 654 - -
Lcy13g1355 682 Pfam Exo70 exocyst complex subunit C-terminal 290 645 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1355 Lcy-Chr13:31596450 Lcy13g2139 Lcy-Chr13:40284631 3.36E-68 dispersed
Lcy13g1355 Lcy-Chr13:31596450 Lcy11g0247 Lcy-Chr11:3416476 6.38E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1355 K07195 - csv:101207478 1275.0