Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1359 ATGTGGAATCAGAAGCCTGTGAAGGAAAAGAAGGAGGTCGTCACAGGCAATGAATTGGTGGGAATCGCCATTGACAAGGACAAAGGAAGCCAAAATGCTCTCAAATGGGCCACTGAGAATCTCCTTATCAAGGGACAAACTGCCATTCTCATCCATGTCAAACTCAGATCTTCTGGCTCTTCTCTGACTTCCCCTAAGGTAATGTCTGCAACTGACAATGGCAATGACAATGTCAATGTTTTGGTAAGCAAGGATATCGATCCGAACACGAGGGATTTGTTCCTTCCTTTTCGCTGCTTCTGTACCCGTAAAGATATATTCTGCAAAGACATCGTCATAGAAGATGTAGATGTTGCAAAAGCGTTGATTGAATATGTCAGTCAGGCTGGAATTGAGACTTTGGTTGTCGGAACCACAACGAAAGGTGGCTTCTTGAGAAGATTCAAGACGACGGATATTCCGGGTAGTGTTATCAAAGGAGCACCAGATTTCTGCAATGTTTATGTCATATCAAGAGGAAAAATCCAAACTATGCGATCAGCCTCCCGTCCTGCTCCAACTTCTTCTCCTCTACGAAGTTTATTGCTAAGCCAATCCGGTAGCAGATCACAATTATCGGAGTCACAAATTTCTACGATTCAAAGACCTGAAAAGCCTCCCATTGAACCAGCACGTAGATCTCAAGACAACATCGAGTTCAGCAGGTCGCCATTCACTAGGAAAGGCTACAATGGCAAAATGCCAGGGGAAATGAATCTGCCAGATACTGATATTTCTTTCGTTAGCTCGGGAAGGCCAAGTGTCGACAAATTGTTCCCTACATTCTTTGATGCCGATTCAGGAAGGATCCCCCCACGACTATCTAATGGAACCGATGGCGATATATATAATAGCTTTGAGTCACAACAGTTCGGACGTAAATCATTGGATGTAAACTATCCACCTGAATTTTCATCGGTCTTCTCGGAAGGTGACAGATTATCGACTTCGTCACAGAGTATGGAAGAAGTAGAGGCTGAGATGAGGAGGCTGAAGCTGGAACTAAAGCAAACTATGGAAATGTATAGCACAGCCTGCAAGGAAGCACTTACAGCTAAGCAAAAGGCAATAGAGCTTCAGCGATGGAAGTCTGAGGAAGAGCGGAGAATAGAGGAGGCAAGACTTGCTGAGGAAGCTGCATTAGAGATGGTCGAGCAGGAAAAGGCGAAGTCTCGAGCTGCTATCGAGGCTGCTGAAGCAGCTAAAAGGATTGCTGAGTTGGAAGCACAAAAGAGAATTAATGCTGAAATGAAAGCATTTAAGGAAGCAGAAGAGAAAAAGAAGGCATTAGATGCTTTGGCGCACAACGATGTCAGGTATCGGAAGTACTCGATCGAGGAGATCGAAGCTGCCACCGAGTTCTTTTCAGAATCTTTGAAGATTGGAGAGGGAGGTTATGGGCCTGTTTACAAGGGTTATCTGGACCACACACCAGTTGCAATCAAGGTCTTACGTCCGGATGCAGCTCAAGGAAGGTCACAGTTCCAGCAAGAGGTCGAAGTACTAAGCTGCATTCGACATCCTAACATGGTTCTTCTCCTCGGAGCATGCCCCGAGTATGGCTGCTTGGTCTATGAGTTCATGGCAAATGGTAGCTTGGATGATTGCCTCTTTCGTCGGAAAGAAAACTCGAAACCTCTTTCTTGGCAACTTAGATTCAAAATTGCAGCAGAAATTGGCACTAGCTTGCTGTTCCTTCACCAGGCTAAGCCCGAGCCACTTGTGCACCGTGATTTGAAGCCGGCCAACATCTTGCTCGATCGTAACTATGTTAGCAAGATTAGCGATGTTGGTTTGGCTAGGCTTGTTCCCCCGTCTGTAGCAGACAGTGTGACACAATATAGAATGACTTCAACTGCTGGCACATTCTGCTATATCGATCCTGAGTATCAACAAACCGGCATGCTCGGTGTAAAGTCCGACATATATTCTTTGGGAATCATGTTCTTGCAACTGATTACAGCAAAGCCACCAATGGGATTGACTCATCACGTGGGAAGAGCCATTGAGAAAGGAACTTTGCTTGAATTTCTTGATCCATCTGTTACTGATTGGCCAGCTGAAGAGAGCTTGTGCTTTGCAGAGTTGGCTTTAAAATGTGCAGAATTGAGAAGGAAAGATCGGCCTGATCTTCGTAAGGTTGTTCTTCCAGAACTCATCAGATTACGAACGATAGCCGAAGCCAGCATGTACTCGTCAGTGACGGATGGTGTTAGCAGCCCTGAATTCAGCAACAGTCAGATTCGTCTCAAAACAGATGTAAGCGGTGAAAGCTTTTCCTCACGATCTTGCAATAGCCCTGGAGTCTTGTCGCACTCGCTGTCATAG 2367 45.5 MWNQKPVKEKKEVVTGNELVGIAIDKDKGSQNALKWATENLLIKGQTAILIHVKLRSSGSSLTSPKVMSATDNGNDNVNVLVSKDIDPNTRDLFLPFRCFCTRKDIFCKDIVIEDVDVAKALIEYVSQAGIETLVVGTTTKGGFLRRFKTTDIPGSVIKGAPDFCNVYVISRGKIQTMRSASRPAPTSSPLRSLLLSQSGSRSQLSESQISTIQRPEKPPIEPARRSQDNIEFSRSPFTRKGYNGKMPGEMNLPDTDISFVSSGRPSVDKLFPTFFDADSGRIPPRLSNGTDGDIYNSFESQQFGRKSLDVNYPPEFSSVFSEGDRLSTSSQSMEEVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKSEEERRIEEARLAEEAALEMVEQEKAKSRAAIEAAEAAKRIAELEAQKRINAEMKAFKEAEEKKKALDALAHNDVRYRKYSIEEIEAATEFFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLDDCLFRRKENSKPLSWQLRFKIAAEIGTSLLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITAKPPMGLTHHVGRAIEKGTLLEFLDPSVTDWPAEESLCFAELALKCAELRRKDRPDLRKVVLPELIRLRTIAEASMYSSVTDGVSSPEFSNSQIRLKTDVSGESFSSRSCNSPGVLSHSLS 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 31660266 31665588 - Maker00025527 Lcy13g1359 651664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1359 788 Pfam Universal stress protein family 20 157 IPR006016 -
Lcy13g1359 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1359 788 CDD STK_N 19 173 - -
Lcy13g1359 788 Gene3D HUPs 9 170 IPR014729 -
Lcy13g1359 788 Gene3D Phosphorylase Kinase; domain 1 445 540 - -
Lcy13g1359 788 MobiDBLite consensus disorder prediction 178 251 - -
Lcy13g1359 788 PANTHER OS02G0152300 PROTEIN 22 748 IPR051348 -
Lcy13g1359 788 Coils Coil 327 354 - -
Lcy13g1359 788 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 162 - -
Lcy13g1359 788 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 440 540 - -
Lcy13g1359 788 Coils Coil 376 423 - -
Lcy13g1359 788 ProSiteProfiles Protein kinase domain profile. 468 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1359 788 Pfam Protein kinase domain 471 727 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1359 788 Coils Coil 426 446 - -
Lcy13g1359 788 MobiDBLite consensus disorder prediction 178 215 - -
Lcy13g1359 788 Gene3D Transferase(Phosphotransferase) domain 1 541 747 - -
Lcy13g1359 788 SUPERFAMILY Protein kinase-like (PK-like) 452 728 IPR011009 -
Lcy13g1359 788 SMART serkin_6 468 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1359 Lcy-Chr13:31660266 Lcy4g1566 Lcy-Chr4:39577499 3.57E-273 dispersed
Lcy3g0933 Lcy-Chr3:32749813 Lcy13g1359 Lcy-Chr13:31660266 4.00E-273 transposed
Lcy9g1759 Lcy-Chr9:42784375 Lcy13g1359 Lcy-Chr13:31660266 2.11E-288 transposed
Lcy13g1359 Lcy-Chr13:31660266 Lcy2g1541 Lcy-Chr2:20557177 3.95E-48 wgd
Lcy13g1359 Lcy-Chr13:31660266 Lcy9g1758 Lcy-Chr9:42782832 5.58E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65573 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1359 - - - 0.0