Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1382 ATGACGACCAAGAAAGTCTCGACTAACGTGAGTGGAGATACATCTTTGGTTGATAAAGAGACGGAATCTACCCCCATCCTCTTACCACAAGAGTCAACTGCACGCTTGTTGTCAGTTGAAAACGACGTGCGCGAGATCAAGAAGATCTTAGAATTGATTTGGGAAAAGATCGGCAGCAAGACTGAACAAGTGGCTATGAATCCGGCAGCACAAGCAAACTGGGGAAAAGGCCAACAAAATCGCCAAGAGGAAAGCAGTAAATCAAAATACCCGCAAGAAAAGCAAAATTTGGATCAAAGAATAGTCCAAGAATGGGATATTGCTCCAAAAAGATATCAAGATTTCACTGAAAATCCGTTATACCGAAGACATCAAGAATGGACAGATTCTTCAACCTTAAACATGTTGGAAAATGATGCTAATCCAACTATCAGCAAGTCAACTGGCCTGCCACGGAAGCGCTTCTACCGTGCAAGAGCACACAGCAACCCTCTGAGCGACTCTCACTTCCCAGTACCAATCTCCCCCAGTGAAGTTGATTATTCCCTTCATTACCCTCAGCTGTTCCCTTCAAATGATCAGCGGGATAGATCCAAAAAGATTGAATTTGCAGACATTGGTTGTGGTTTTGGAGGTCTTCTAATTAGTCTCTCAAACCTTTTCCCCGAAACCCTGATGATTGGAATGGAACTCAGGGATAAAGTAACAGAGTATGTTAAGGAGCGGATCGTAGCTTTGAGAGTAGCAAATCCCGGCCAGTACCAAAACGTTTCAGTAGTTCGAACAAATTCCATGAAGTACATTCCAAACTACTTCGAAAAAGCACAACTATCGAAAATGTTTTTCTTGTTCCCAGACCCTCATTTCAAAGAGAAGAATCATCGTCGTCGCGTTATCAGTCCACATTTGCTTGATGAGTACGCGTATGCTCTGAGAGTAGGAGGGATTATATACACAATTACAGATGTGGAAGAGCTTGGAGAGTGGATGAAGACTTGTCTAGAGAATCACCCCTTGTTCGAAGCTCTAACATCGGAAGAGCTCGAGGTGGATCCAGCCGTAAAGCTTTTAAGCTCTGCAACTGAGGAAGGACAGAAGGTTGCAAGAAATGAGGGACAGACTTTTCAGGCAGTTTATAGACGCATTAGTGCAGCACCATGA 1161 43.58 MTTKKVSTNVSGDTSLVDKETESTPILLPQESTARLLSVENDVREIKKILELIWEKIGSKTEQVAMNPAAQANWGKGQQNRQEESSKSKYPQEKQNLDQRIVQEWDIAPKRYQDFTENPLYRRHQEWTDSSTLNMLENDANPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSEVDYSLHYPQLFPSNDQRDRSKKIEFADIGCGFGGLLISLSNLFPETLMIGMELRDKVTEYVKERIVALRVANPGQYQNVSVVRTNSMKYIPNYFEKAQLSKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYALRVGGIIYTITDVEELGEWMKTCLENHPLFEALTSEELEVDPAVKLLSSATEEGQKVARNEGQTFQAVYRRISAAP 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 31978244 31982551 + Maker00025557 Lcy13g1382 651687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1382 386 ProSiteProfiles SAM-dependent methyltransferase TRMB-type domain profile. 153 381 IPR003358 GO:0006400(InterPro)|GO:0008176(InterPro)
Lcy13g1382 386 MobiDBLite consensus disorder prediction 71 97 - -
Lcy13g1382 386 NCBIfam tRNA (guanosine(46)-N7)-methyltransferase TrmB 199 382 IPR003358 GO:0006400(InterPro)|GO:0008176(InterPro)
Lcy13g1382 386 FunFam tRNA (guanine-N(7)-)-methyltransferase 179 381 - -
Lcy13g1382 386 Pfam Putative methyltransferase 201 376 IPR003358 GO:0006400(InterPro)|GO:0008176(InterPro)
Lcy13g1382 386 Gene3D Vaccinia Virus protein VP39 179 381 IPR029063 -
Lcy13g1382 386 Hamap tRNA (guanine-N(7)-)-methyltransferase [METTL1]. 150 382 IPR025763 GO:0008176(InterPro)
Lcy13g1382 386 CDD AdoMet_MTases 203 320 - -
Lcy13g1382 386 PANTHER 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE 124 381 IPR003358 GO:0006400(InterPro)|GO:0008176(InterPro)|GO:0008176(PANTHER)|GO:0030488(PANTHER)|GO:0036265(PANTHER)|GO:0043527(PANTHER)
Lcy13g1382 386 MobiDBLite consensus disorder prediction 1 24 - -
Lcy13g1382 386 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 198 348 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1382 K03439 - - csv:101211407 493.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1382 Lcy-Chr13:31978244 Lcy1g1712 Lcy-Chr1:17927115 1.71E-47 dispersed
Lcy13g1382 Lcy-Chr13:31978244 Lcy2g1510 Lcy-Chr2:19191047 1.24E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g227 . . . . . . . . . . . . . . Sed01g1290 . . Bhi04g01134 Tan02g2586 Cmetu03g0727 . Hepe10g0338 . Lcy13g1382 . . . . . . . . . . . . . . Cme03g01721 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01242 Cam08g1700 Cec08g1280 Cco08g1401 Clacu08g1396 . Cre08g1182 Lsi08g01104 Csa02g02294 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006205 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 37