Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1393 ATGGTGAATTCCGTGGTGGCGCGTGCTACGAGCGATATGTTGATTGGTCCAGATTGGGCGATGAACATCGAGATCTGTGATATGCTGAACCATGACCCTGGGTACGCATTGCATCCGGTTGATTGCTTTATTGTTTTTCGTCTTCGTTCATTGCAAGCGAAAGATGTTGTTAAGGGTATAAAGAAGCGCCTTGGAAGCAAGAACGTAAAAGTTCAGCTTCTTGCGCTGACGGAACCTAAAGGTCTATGGCGAAGGATCATTGTTAATTTTGCTTGGGAAGTCAACACTTTGGATCAGAGGATTTGGACCATTTCTTTTGGTATTGTTAGTATGCGCAGTGGTGACCGATGGATTATTGGAGGGGATTTTAATGTGACTCGCTGGTCCTGGGAGAAATCACATGGACAGCGCATCACTAGAAGTATGCGTATTTTCAACAAATGGATAGCCTCTTATCAGCTCCTGGATATTCCATTACAGAATGGCTGTTTCACTTGGTCCAGTTTTGGTGACACCCAATATCTCTCTCTAATAGACAGGTTTTTTATCACCAAAGATTGTCTGGCTAAATTTGGAGCGTCTCATCTTCTCCGGCTTGACAGAATTACTTCAGACCATTATCCGTTGTCCCGTACTTTTGGTGATATTAATTGGGGTCCTGGTCCTTTTCGATTTGAAAATTCTTGGCTTCATATCGCTTCTTTTCGAGAGGTTTTGGATAATTGGTGGAGTCAGAATCCCCTACAGGGATGGCCAGATATGGTTGCCAGTCGGGTTCATCGTAATATCGGTAATGGCCAAGGTACATCCTTCTGGAATGATTCTTGGCTGAATGGTGGGATCCTTGCAACACTTTTCCCACGTCTATATCGATTAACCACCAATCCAAATGCTACTGTCGCAGAAGTTTGGAATTCATCTCAATTGGCTTGGAATCTTTGCCCTCGTCGTTATCTTAATGAGTTTGAAATTAATGAATGGGCTCAACTTTCTCATCTTCTATCCTCTACTAGATTACGGGATATGAATGACTCTTGGTCTTGGCTTCTTCGTCCATCCAGTTTGTTTACGGTTAAATCTTTGATGCATGACCTTTTGCATGTTCCTAATACCACATCGAATAATCTTTTTGCTGTGATATGGAAAGATAATTATCCTAAAAAGATAAAAATCTTTCTATGGGAGCTTAGTCTTGGGGCCATCAATACGGCGGATCGCCTTCAACGAAGAATGCCTCACTTTCACCTATTGCCATCTTGGTGCATTATGTGCTCATCAAACATGGAGAATTCGGGCCATCTTTTTGTCACGTGTCCTTTTGCTTCTAGATATTGGGCCTTTATGGTTCATGCTTTCGGTTGGTATATTCCGTTGCCGATGGACATTCATGATCTTTTGGCTTCTACTTTGTGGCTATTGGAAACAATCATTAAGAATTGTGGGGATATTCTTCATATGCATGTGGCAGAGAAGGGCCTTCTTCATGAGATGGTTAAAATGGTGAAGAAGAAGCCTGATTTTCGCGTCAAAGAGAAGATATTGATTTTGATTGATACTTGGCAAGAAGCTTTTGGAGGACCTAGGGCAAGATATCCACAATACTATGCTGCTTACCAGGAATTGTTGCGTGCTGGGGCAGTTTTCCCTCAGAGGTCTGAGAGCTCTGCGCCTGTATTCACCCCTCCACAAACACAACCTTTGGCATCTTATCCTCCAAATCTAAGGAATCCTGATCATAATCCGCAAGATGGTGCTGAGACCTCTGCTGAGTCTGAGTTTCCGACCCTAAGCCTGACTGAAATTCAAAATGCCCGTGGAATTATGGATGTCCTTTCAGAAATGCTTAATGCATTAGAACCAGGGAACAAAGAGGCTATTAGACAGGAGGTTATTGTTGACTTGGTTGACCAGTGCCGTACTTACAAGCAAAGGGTGGTTCACCTTGTTAACTCTACTGCGGATGAGTCACTACTTTGCCAAGGACTTGCACTTAATGATGATCTGCAGAGGCTACTTGCGAGGCATGAATCCATTTCTACTGGCAATCCTGTTACACAGAAACCGAAGTCTGAATCTACTACAGCACTTGTTGATGTAGACAGGCCTCTTATTGACACTGGAGATAACAGCAAACAGCCTGAGACAAAAGCTGCCTCGAATGCCGGTGAAGGTTCTCAAACCCTGAATCAGTTGTTGCTTCCTGCACCTGCTGCAACTAATGGTCCAGCTCCTCCAGCTAAAGCTGAACCCCATATTGACTTGCTGAGCGGTGACTTCAATTCACCGAAGGCTGAGACTTCATTGGCTCTTGTTCCTCTCGGAGAGCAACAAGCTAATCCTCCTGCATCCGATCAAAATGCTCTTGTTCTTTTTGACATGTTCTCTGACGGTAACAATGCCTCTAATCCTGCAAATCCCCCTCCTATCAATCCTGGCGGGCAACCCCACCCACCTGCTTCGCAATTTCAACAGCAACAGCTACAGCAACAAAATGTTCATTCTCCGCAACAGCAACAGCTACAGCAACAAAATGTTCATTCTCCACAAGGTGGATTTTATCCAAATGGGAATGTTGGGAACATGGGTTCACCTAATTATGAGCAATCGATGTACATGCAGGGCCCTGGTTCTGCCTGGAATGGTCAAATTCCTCAGCAGCAGCAACAGCAGCAGCCCCCTTCACCTGGCTATGGTTCACAAGCAACTGGTTCATTGCCACCTCCGCCATGGGAAGCTCAGTCTTCTGATGATGGCAGCCCAGTAGCAGGCTCTCATTACCCTCAACCAATGCAGGTTACTACCCAGGTTATTGTCTCACATGGACTCGGTGGACATCCTCAGGGACCTCAATCGATGGGGAACGAGGTTGTAGGTATAGGTATGTACATCCAGCCGATAACAAGCGGTCAAATGAATAGCCATGTTAATCCGAACCATCAGTTGGGGTTGCACCCGCCGCAGCTCCCAGGCATGCAAAATATGGGTATGCCGATGCCTCCGCAACATCCGCAAGCTAACCAGATGACACAACCCTACTACCCTCAACAGATGTATGGCAACCACAACCAATACAACTCTGGCTATGGCTATGGTCATGGTCAAGGTCAACAGCAGGTGCCCCAATATCTCGATCAGCAAATGTATGGCCTGTCCGTCAGAGATGATATGAATATGGGCAATTCGTCTTCTCAGGCTTCTGCTTTATCTTATGTGCCTCCCATGAGGCCAGTCAATAAGCCAGAGGATAAATTGTTCGGGGACCTCGTCGACATCGCAAAATTCAAACCCGGCAAATCTACTCCCGGCAGAGCTGGTAGCATGTGA 3324 45.46 MVNSVVARATSDMLIGPDWAMNIEICDMLNHDPGYALHPVDCFIVFRLRSLQAKDVVKGIKKRLGSKNVKVQLLALTEPKGLWRRIIVNFAWEVNTLDQRIWTISFGIVSMRSGDRWIIGGDFNVTRWSWEKSHGQRITRSMRIFNKWIASYQLLDIPLQNGCFTWSSFGDTQYLSLIDRFFITKDCLAKFGASHLLRLDRITSDHYPLSRTFGDINWGPGPFRFENSWLHIASFREVLDNWWSQNPLQGWPDMVASRVHRNIGNGQGTSFWNDSWLNGGILATLFPRLYRLTTNPNATVAEVWNSSQLAWNLCPRRYLNEFEINEWAQLSHLLSSTRLRDMNDSWSWLLRPSSLFTVKSLMHDLLHVPNTTSNNLFAVIWKDNYPKKIKIFLWELSLGAINTADRLQRRMPHFHLLPSWCIMCSSNMENSGHLFVTCPFASRYWAFMVHAFGWYIPLPMDIHDLLASTLWLLETIIKNCGDILHMHVAEKGLLHEMVKMVKKKPDFRVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSESSAPVFTPPQTQPLASYPPNLRNPDHNPQDGAETSAESEFPTLSLTEIQNARGIMDVLSEMLNALEPGNKEAIRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLALNDDLQRLLARHESISTGNPVTQKPKSESTTALVDVDRPLIDTGDNSKQPETKAASNAGEGSQTLNQLLLPAPAATNGPAPPAKAEPHIDLLSGDFNSPKAETSLALVPLGEQQANPPASDQNALVLFDMFSDGNNASNPANPPPINPGGQPHPPASQFQQQQLQQQNVHSPQQQQLQQQNVHSPQGGFYPNGNVGNMGSPNYEQSMYMQGPGSAWNGQIPQQQQQQQPPSPGYGSQATGSLPPPPWEAQSSDDGSPVAGSHYPQPMQVTTQVIVSHGLGGHPQGPQSMGNEVVGIGMYIQPITSGQMNSHVNPNHQLGLHPPQLPGMQNMGMPMPPQHPQANQMTQPYYPQQMYGNHNQYNSGYGYGHGQGQQQVPQYLDQQMYGLSVRDDMNMGNSSSQASALSYVPPMRPVNKPEDKLFGDLVDIAKFKPGKSTPGRAGSM 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32192674 32204964 + Maker00025724 Lcy13g1393 651698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1393 1107 MobiDBLite consensus disorder prediction 679 693 - -
Lcy13g1393 1107 Gene3D - 463 559 IPR008942 -
Lcy13g1393 1107 SUPERFAMILY ENTH/VHS domain 3 77 IPR008942 -
Lcy13g1393 1107 ProSiteProfiles VHS domain profile. 9 77 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Lcy13g1393 1107 Pfam GAT domain 607 679 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Lcy13g1393 1107 Gene3D Endonuclease/exonuclease/phosphatase 94 214 IPR036691 -
Lcy13g1393 1107 Gene3D - 595 686 IPR038425 -
Lcy13g1393 1107 ProSiteProfiles GAT domain profile. 592 680 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Lcy13g1393 1107 MobiDBLite consensus disorder prediction 794 927 - -
Lcy13g1393 1107 PANTHER TOM1-LIKE PROTEIN 1 77 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Lcy13g1393 1107 MobiDBLite consensus disorder prediction 553 594 - -
Lcy13g1393 1107 SUPERFAMILY GAT-like domain 552 681 - -
Lcy13g1393 1107 MobiDBLite consensus disorder prediction 708 734 - -
Lcy13g1393 1107 MobiDBLite consensus disorder prediction 816 909 - -
Lcy13g1393 1107 SUPERFAMILY ENTH/VHS domain 468 550 IPR008942 -
Lcy13g1393 1107 CDD VHS 2 77 - -
Lcy13g1393 1107 MobiDBLite consensus disorder prediction 679 759 - -
Lcy13g1393 1107 SMART VHS_2 2 545 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Lcy13g1393 1107 Pfam VHS domain 468 539 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Lcy13g1393 1107 Pfam Endonuclease/Exonuclease/phosphatase family 112 206 IPR005135 GO:0003824(InterPro)
Lcy13g1393 1107 CDD VHS 469 543 - -
Lcy13g1393 1107 Pfam zinc-binding in reverse transcriptase 356 445 IPR026960 -
Lcy13g1393 1107 MobiDBLite consensus disorder prediction 580 594 - -
Lcy13g1393 1107 SUPERFAMILY DNase I-like 110 213 IPR036691 -
Lcy13g1393 1107 CDD GAT_GGA-like_plant 600 678 - -
Lcy13g1393 1107 Gene3D - 1 93 IPR008942 -
Lcy13g1393 1107 ProSiteProfiles VHS domain profile. 469 549 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1393 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1393 Lcy-Chr13:32192674 Lcy9g1616 Lcy-Chr9:41316834 2.99E-179 dispersed
Lcy1g2809 Lcy-Chr1:55996907 Lcy13g1393 Lcy-Chr13:32192674 1.25E-10 dispersed
Lcy8g1097 Lcy-Chr8:37073465 Lcy13g1393 Lcy-Chr13:32192674 7.69E-06 dispersed
Lcy9g0986 Lcy-Chr9:32938226 Lcy13g1393 Lcy-Chr13:32192674 1.06E-14 dispersed
Lcy13g1393 Lcy-Chr13:32192674 Lcy13g1401 Lcy-Chr13:32302322 4.06E-14 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003825 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 45