Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1408 ATGGCGGATTCGAGTGCAGCAGAGGAGATCGGTGAAGAACAGCAGCTACTCGGCGGCGGTGGTAACGGCGGCGGCGGATCCAACAAAGGAGGCATCAGAACTTTGCCATTTATCATTGCAAATGAGGGGCTTGAGAACTGTGCGAGCAAGGGCTTGAATTCAAATTTGACCCGCTACTTAATGGTAGAGTACGGGATGAGTGCGGTTCAAACTTCTAACCTTTTTAGTTACTGGGCATCTCTCAACGGTCTCACTCCGGTCATCGGTGCCTTTCTCGCCGATTCCTGCGTTGGTCGCTATAGAATGATCGCCATGGGTACAATTTCCAGCTCTCTGGGGATGGCTCTGTTATGGCTAACAGCTGCAATTCCACAAGCAAGGCCTTGTAGTGACAAATCTACGGCTCATTGCAGCTCCCCAACAGCAGTTCAACTGTTTGTTTTATGTTGTTGTTTCATTCTTATGTCCATTGGAGCAGGCGGCATTGAATCATCATGTCTTGCATTTGGTGCAGACCAACTCACAAACAAAAATGCAGGCCTTTTGGAGAGCTTCTTTGGTTGGTACTATGTCTCAACGCTGGTCGGAGCCCTGTTTGGAATGATTGTCATTGTTTACATTCAAGATAACTTCGGTTGGAATTTGGGATTTGGAATTCCTGTTATTTTGATGCTCTTCTCTATCCTTTCTTTTTTCTTGGCTTCTTCTTTCTATGTCAAAGTTGAGCCTTCTGCTAGCTTCTTTAACTCTCTCTTCCAAGTCGTTGTTGCTTCGTATAGGAAGAGACATGTTCGATTACCGTCCAAGAGTTCGTATGAGCTTTACCATCACAGCGCTGCGTCCACTCGACAAAAGCCATCTGACAAATTAAGGTTTCTAAACAAAGCCTGTGTGATTTTGAATCCCGAGGAAGAAACAACATCAAATCCATGGACCCTATGCACAGTGGAACAAGTAGAAGATTTCAAATCAATCATCAACGTAATCCCAATATGGTCCGTCGGAATCTTATTCTCAGTTTCATTCAACCAAATCACTTTGCCATATTTACAAGTCTCATCAATGGACCGTCGTATAACGCCCAATTTCCAAGTCCCAACAGGCTCTTTCACAATGTTCCTTTTGATCTGCATCGGACTCTGGATTTTCTTCTACGACAGAATCCTCGTCCCTCTCGCAACAAAAATCGCTCGAAAACCAACCCGATTGAAACCCCTTCAAAAAATCGGACTCGGGATAGTCATGAGCTGCATTTCAACAGCATCTATGGCTGTTGTCGAGATCAAACGTCGAGCCAAGGCGGTGGAACAAGGCTTCTCCGATGACCCACATGCAGTGGTGAATATGTCGGCGTTTTGGCTACTACCGCACTACGTATTCGGGGGAATTGCCGATGCTTGTTTTATGATCGGACAGAATGAGTTCTTTTATTCGGAGCTACCCAAGTCAATGTCCAGCGTTGCCATTGCTCTTCCTAGCCTGAGCATGTCGGTCGGAAGTCTGGTGGCGAGTTTCTTATTGACAGCCGTGGATGATTTGACGAAATCTGAAGAAGGAGAAAGTTGGGTTTCAAGTAATATTAATATAGCTCATTACGATTATTACTTTTTTCTCATTAGCGGTCTCTGCTTTGTTGATTTTATTTACTTTGTTGTGTGTTCTAAGAGGGTTGTGGTTGACAATGGCGCTTTCTCTACGGCCACTTTGGTGAAGGTTGATAGTGCTAGAAGATATGGAAATCTCTTGGAGGTCCTACAGGTGGATTGTGGTGGAGATGAAGGTTACGTCATATACCAGATGCATGCAAAGGACGTGACAGTGCTGTTCGGGGGGAGGTGGGATGAAAACAACCGATACCATGAGTTTAAGTCCATCAGTGTGTCGTTACCGTTGGGATGCACATTTGAGGGGTTTATCGAATGCATTCGGAGGGGGATGCTCAGAGTGTTGTTTCACAGTGCTTTGGTGTTGGCAACCATGGGTCCACCTTGTAGCATAAGGGTGTACACAGCTGTAGAATATGAATATTACATGAGACAGTTAGAAGACATAGTCCCCTCTATTAGGACGGAGTTGGAAGGCATGGGAAAAGCTAGGTGGGACAGGGCGTTTTTTGCAAGGAAGAGGTATACAATAATGACAACCAATGCCTCCGACAGCATTAATGGAATGTTGAAGGATGCACGTGAACTTCCTGTCATTCATCTTCTTGAAATTTACCACATCAATCAATATCAATTCGAAGTACATGATCGGATGAAACAGTTCGAGGTTAACATCGTGGCTCGAACATGCACGTGTAGACGGTGGGACTTGGATATAATACCATGTGCACATGCATGTCTTGCGTTATCGCGGGGGAATATGGAATTTCAAGTCTACTCACATGAGTTCTATCACATTTCAAATTTAGTTGAATTATATAGCAAAGATGTGCAATCAATTGGCAATGTTGCACAATTTTCAAACAATGCAGTTGCTGGTGATGATCCTGTCCTCCCGCCAGCCACAAAACGATCAGTTGGCAAACCTAAAAAAAAAAGGATCCCGTCTTGCATAGAAGGGAGGCCAACTATAAAGTGTGGACGGTGTGGGCAAGTTGGCCACAATCGTAGGTCCAACAGGAATCCCATATCTAATTGA 2643 44.72 MADSSAAEEIGEEQQLLGGGGNGGGGSNKGGIRTLPFIIANEGLENCASKGLNSNLTRYLMVEYGMSAVQTSNLFSYWASLNGLTPVIGAFLADSCVGRYRMIAMGTISSSLGMALLWLTAAIPQARPCSDKSTAHCSSPTAVQLFVLCCCFILMSIGAGGIESSCLAFGADQLTNKNAGLLESFFGWYYVSTLVGALFGMIVIVYIQDNFGWNLGFGIPVILMLFSILSFFLASSFYVKVEPSASFFNSLFQVVVASYRKRHVRLPSKSSYELYHHSAASTRQKPSDKLRFLNKACVILNPEEETTSNPWTLCTVEQVEDFKSIINVIPIWSVGILFSVSFNQITLPYLQVSSMDRRITPNFQVPTGSFTMFLLICIGLWIFFYDRILVPLATKIARKPTRLKPLQKIGLGIVMSCISTASMAVVEIKRRAKAVEQGFSDDPHAVVNMSAFWLLPHYVFGGIADACFMIGQNEFFYSELPKSMSSVAIALPSLSMSVGSLVASFLLTAVDDLTKSEEGESWVSSNINIAHYDYYFFLISGLCFVDFIYFVVCSKRVVVDNGAFSTATLVKVDSARRYGNLLEVLQVDCGGDEGYVIYQMHAKDVTVLFGGRWDENNRYHEFKSISVSLPLGCTFEGFIECIRRGMLRVLFHSALVLATMGPPCSIRVYTAVEYEYYMRQLEDIVPSIRTELEGMGKARWDRAFFARKRYTIMTTNASDSINGMLKDARELPVIHLLEIYHINQYQFEVHDRMKQFEVNIVARTCTCRRWDLDIIPCAHACLALSRGNMEFQVYSHEFYHISNLVELYSKDVQSIGNVAQFSNNAVAGDDPVLPPATKRSVGKPKKKRIPSCIEGRPTIKCGRCGQVGHNRRSNRNPISN 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32419083 32428439 + Maker00025665 Lcy13g1408 651713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1408 880 SUPERFAMILY MFS general substrate transporter 55 556 IPR036259 -
Lcy13g1408 880 ProSiteProfiles Zinc finger SWIM-type profile. 756 788 IPR007527 GO:0008270(InterPro)
Lcy13g1408 880 Gene3D MFS general substrate transporter like domains 18 563 IPR036259 -
Lcy13g1408 880 Pfam POT family 100 522 IPR000109 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy13g1408 880 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 28 554 - GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Lcy13g1408 880 SMART 26again6 763 790 IPR006564 GO:0008270(InterPro)
Lcy13g1408 880 Pfam SWIM zinc finger 756 786 IPR007527 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1408 K26551 - - gmx:100809846 558.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1408 Lcy-Chr13:32419083 Lcy13g1410 Lcy-Chr13:32440680 0 dispersed
Lcy7g1341 Lcy-Chr7:19733385 Lcy13g1408 Lcy-Chr13:32419083 8.86E-39 dispersed
Lcy9g0413 Lcy-Chr9:11583478 Lcy13g1408 Lcy-Chr13:32419083 3.76E-42 dispersed
Lcy13g1408 Lcy-Chr13:32419083 Lcy13g1411 Lcy-Chr13:32453651 1.19E-07 proximal
Lcy13g1407 Lcy-Chr13:32357746 Lcy13g1408 Lcy-Chr13:32419083 3.64E-180 tandem
Lcy13g1408 Lcy-Chr13:32419083 Lcy4g1499 Lcy-Chr4:37722146 2.40E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g306 Blo01g01773 . . . Bpe02g01179 Bpe02g00171 . Bma01g02554 Cmo05g00622 . . Cma05g00596 . . . . . Bhi04g00838 . . . Hepe10g0353 . Lcy13g1408 . . . . . . . . . . Cone20ag0602 . . . Cme03g01737 . . . . . . . . . . . . . . Car05g00540 Cpe11g00522 . . . . . . . . Cla08g01227 Cam08g1686 Cec08g1265 Cco08g1385 Clacu08g1384 . Cre08g1169 Lsi08g01090 . Chy03g01243 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003157 1 4 1 2 1 1 1 1 1 3 1 1 1 2 1 1 1 0 1 1 2 4 1 2 3 1 3 2 2 1 47