Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1413 ATGAGTGGATTATTGAAGATGGATGAGCAATTTGTCGAAATGCTGTGTATCGAAAATCATTCAGCCTTTGAACTCACCGGCATATCAATGGCCAAAATTGCATTGGGAAGCATCGGTGAGGCCACCCAGCCCGACTGCATCCGAGCCCTCATTGTCGAGTTCATTGTCACCTTCCTCTTCGTCTTCGCTGGCGTCGGATCAGCCATAGCTGCCAATACACTATTGGCAAACACGCTGGTGGGGTTGTTCGCGGTTGCAGTCGCACATGCGCTCGTTGTGGCTGTGATGATCTCCACTGGCCACATTTCCGGTGGCCACCTCAACCCTGCCGTTACTCTCGGTCTCCTTTTCGGTGGCCACATCACTGTCGTCCGATCTGCTCTATATTGGATCATTCAGTTGCTGGCAGCGTCAGCTGCTAGTTTTCTGTTATCGTACCTCACCGGAGGCTTGCCCACTCCAATCCACACATTAGCAAGTGGAGTTGGCTACCTTCAGGGAGTGATATGGGAGATTATTCTCACCTTCTCCTTGCTGTTCACTGTCTATGGAACAATGGTAGATCCAAAGAAGGGAGCTCTCGATGGGTTGGGTCCATTGTTGACTGGGTTTGTGGTGGGGGCCAACATCTTGGCTGGTGGGGCTTTTTCTGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCTGCTTTGGTAGCTGGGGACTGGACTGACCATTGGGTTTACTGGGTTGGACCTCTAATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAATTTCTTCATTGAGAGATCTCATGCCCCTCTACCTAGGGCGGAAGATGGCTATTAG 831 50.9 MSGLLKMDEQFVEMLCIENHSAFELTGISMAKIALGSIGEATQPDCIRALIVEFIVTFLFVFAGVGSAIAANTLLANTLVGLFAVAVAHALVVAVMISTGHISGGHLNPAVTLGLLFGGHITVVRSALYWIIQLLAASAASFLLSYLTGGLPTPIHTLASGVGYLQGVIWEIILTFSLLFTVYGTMVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFFIERSHAPLPRAEDGY 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32482233 32485478 + Maker00025632 Lcy13g1413 651718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1413 276 SUPERFAMILY Aquaporin-like 42 270 IPR023271 -
Lcy13g1413 276 PRINTS Major intrinsic protein family signature 48 67 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g1413 276 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g1413 276 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g1413 276 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g1413 276 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g1413 276 PRINTS Major intrinsic protein family signature 240 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g1413 276 PANTHER AQUAPORIN-8 30 267 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lcy13g1413 276 FunFam Probable aquaporin TIP1-1 31 273 - -
Lcy13g1413 276 Pfam Major intrinsic protein 41 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g1413 276 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Lcy13g1413 276 CDD MIP 48 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g1413 276 Gene3D Glycerol uptake facilitator protein. 30 272 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1413 Lcy-Chr13:32482233 Lcy1g1316 Lcy-Chr1:12646879 3.90E-75 dispersed
Lcy13g1413 Lcy-Chr13:32482233 Lcy3g2133 Lcy-Chr3:48287893 1.47E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1413 K09873 - csv:101205380 438.728