Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g1413 | ATGAGTGGATTATTGAAGATGGATGAGCAATTTGTCGAAATGCTGTGTATCGAAAATCATTCAGCCTTTGAACTCACCGGCATATCAATGGCCAAAATTGCATTGGGAAGCATCGGTGAGGCCACCCAGCCCGACTGCATCCGAGCCCTCATTGTCGAGTTCATTGTCACCTTCCTCTTCGTCTTCGCTGGCGTCGGATCAGCCATAGCTGCCAATACACTATTGGCAAACACGCTGGTGGGGTTGTTCGCGGTTGCAGTCGCACATGCGCTCGTTGTGGCTGTGATGATCTCCACTGGCCACATTTCCGGTGGCCACCTCAACCCTGCCGTTACTCTCGGTCTCCTTTTCGGTGGCCACATCACTGTCGTCCGATCTGCTCTATATTGGATCATTCAGTTGCTGGCAGCGTCAGCTGCTAGTTTTCTGTTATCGTACCTCACCGGAGGCTTGCCCACTCCAATCCACACATTAGCAAGTGGAGTTGGCTACCTTCAGGGAGTGATATGGGAGATTATTCTCACCTTCTCCTTGCTGTTCACTGTCTATGGAACAATGGTAGATCCAAAGAAGGGAGCTCTCGATGGGTTGGGTCCATTGTTGACTGGGTTTGTGGTGGGGGCCAACATCTTGGCTGGTGGGGCTTTTTCTGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCTGCTTTGGTAGCTGGGGACTGGACTGACCATTGGGTTTACTGGGTTGGACCTCTAATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAATTTCTTCATTGAGAGATCTCATGCCCCTCTACCTAGGGCGGAAGATGGCTATTAG | 831 | 50.9 | MSGLLKMDEQFVEMLCIENHSAFELTGISMAKIALGSIGEATQPDCIRALIVEFIVTFLFVFAGVGSAIAANTLLANTLVGLFAVAVAHALVVAVMISTGHISGGHLNPAVTLGLLFGGHITVVRSALYWIIQLLAASAASFLLSYLTGGLPTPIHTLASGVGYLQGVIWEIILTFSLLFTVYGTMVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFFIERSHAPLPRAEDGY | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 32482233 | 32485478 | + | Maker00025632 | Lcy13g1413 | 651718 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g1413 | 276 | SUPERFAMILY | Aquaporin-like | 42 | 270 | IPR023271 | - | |
Lcy13g1413 | 276 | PRINTS | Major intrinsic protein family signature | 48 | 67 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g1413 | 276 | PRINTS | Major intrinsic protein family signature | 125 | 144 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g1413 | 276 | PRINTS | Major intrinsic protein family signature | 203 | 225 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g1413 | 276 | PRINTS | Major intrinsic protein family signature | 170 | 188 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g1413 | 276 | PRINTS | Major intrinsic protein family signature | 88 | 112 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g1413 | 276 | PRINTS | Major intrinsic protein family signature | 240 | 260 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g1413 | 276 | PANTHER | AQUAPORIN-8 | 30 | 267 | IPR034294 | GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
Lcy13g1413 | 276 | FunFam | Probable aquaporin TIP1-1 | 31 | 273 | - | - | |
Lcy13g1413 | 276 | Pfam | Major intrinsic protein | 41 | 257 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g1413 | 276 | ProSitePatterns | MIP family signature. | 106 | 114 | IPR022357 | - | |
Lcy13g1413 | 276 | CDD | MIP | 48 | 260 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g1413 | 276 | Gene3D | Glycerol uptake facilitator protein. | 30 | 272 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1413 | Lcy-Chr13:32482233 | Lcy1g1316 | Lcy-Chr1:12646879 | 3.90E-75 | dispersed | |
Lcy13g1413 | Lcy-Chr13:32482233 | Lcy3g2133 | Lcy-Chr3:48287893 | 1.47E-74 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g1413 | K09873 | - | csv:101205380 | 438.728 |