Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1417 ATGAGGTCGGATCGTGCATTCCGTAGGTTGCATAAGTTAGTGCAACAACAGCGACCTCTGTTGGTGTTCCTTTCAGAAACAAAGGTGCACTCTTCACGTTTTGAGTTGATTAAAGTTAAACTGGGTTTTGATGGTTGCTTTAGTGTTAATAGTGTAGGAAGAAGTGGTGGTTTGGCATTACTATGGGACTCCACGGTCAGGCGTCCTGGGGTTACCCACCTGGACTTTAGCAAATCAGATCACCGACCGATATTGCTTTCGATGCTCCCGCCATCTCAGTTGAGAGAGGGGTGTGGGCGTAAGATCCGTCGTTTTGAGGATGTCTGGCTGATGTATCCTGAGTTCAGGAAAGTAGTGGAGGAGTCTTGGCAGTCAGGAGCAGCTGAGGCTTCGTCGGTAGGGTTGATGAGGGCTACTGAACGTTGTCTAGCTTCACTAGTTAAGTGGGGCAGAGGGAAGGTTTGGAGATATAGTGATCGTATCAGAGAAGCTTCAGCGCAGTCTGGTCTCAGAGTATTTCTCGCATATTTACTCATCTGGCAGCCCATCAGCAGGCGGTTGGGTGCTCAGGATTCTATTATTTGGCACTTTGAGAAGTCTGGTATATATTCTGTTAAGAGTGTTATCAAGTGGTTACCGTGTGGGTCGGATGCACATTTTGGCTCAAAACCCATCATCCTCCTCGGATTCGCTGCATGGTTGGTGGCAAGGATGCTGGAAAATGGAGATCCCAAAAGTGTGATCTGTGATGCTGGTTTTGGCTCTCTTATGAATAGGCTTCGGTCGGATAATCTCTCCTTATTGTTGAGAGATGCGAGAGAGGAATTGGGTTGGGAACGCTTTGAAGATTTAGTAGTGCTTTTATGGGCCATATGGGGCTGCAGGAATAAGGTGAAATTCAAGGGAGAGGGTCTGTCATGGGAGTTACCTGTCTGGACGGCTGGTTATCTTGAGGTGTACCGTCGGGCGAAGGAACAGATTCCTGTTGAGAGAAGGAATCGGGCTGACCGTGAGTCTGTAAAGTGGGTTGCTCCTCCCGAAGGTTGGTATAAAGTTAATGTAGACGCTGCCTTTGATGGAGAGAAAATGGTTGCTGGGGCGGGCTTGGTAGTGAGAAACCATTCTGGGGAAGTATTGGCTGCGGCAGTTAGATTCCATGGGTTTGTCAGGAGTGCTGATATGGCAGAAGGGTGGGCGGCGACCGACGGTCTGAAACTCGCTACTGAGATGGGGTTTTTTCCAGCAATGATCAAGACTGATTCGAGACGTGTGTTCGAGATTCTGCGAGGCGAGAGAACTGAACTTTCTGATCTGAGTATATTGCTTGTTGATGCCTTGGATGAATGGCCGCTGTCTTGGCCTTTGCAATCTGTCTTCTCCTTACGTGAAGGGAATCGCCTAGCTCATCATCTAGCAAGCCTGGCTATTCATGAGCAAAGTGATTGTGTGTGGATTGAAGAAGTCTCGGCGAAGTCGAAGTCGAAGGCGTATGATTGTCAGATTGTGTTCGCGCTGCATAGGCTTAAGCTCAGTGCAAAACTGCAGAGGCCGCCATGTCAAATGGGATGCAAGAAAGGCTTGCTCTGGAATGGGTTGTGTTCATCATCATCATTGGCTGCCGAAGCATCGAGTTTTCCATTGTGGGCTTTTGAAAGTAAGCTAAAATGTCGTGGGAATCAAGTGCGAAGGATATGGATGTCTCCGGTCTGTATGGGCAGGCGTTCCTGCAAAATTGCTGGCAGGAAGGGTGCTCAAGATGCAAAGAAGGCAAAGCTTTATTCTAGGATTGGGAAGGAGGTTGTTTCTGCCGTTAAAAAGGGAGGAACGAGCCCCATATCCAATACCCTTCTGGCTGCCCTACTTGAGAAAGCCAAGGAGCTTGATGTTCCAAAAGAAATTCTTGACCGCAACATTAAGAGGGCTTCCGAGAAAGGGCAAGAGGCTTACATTGAGAAAATTTACGAGGTATATGGTTATGGTGGTGCTAGTATGGTTGTTGAGGTCTCAACAGATAAGATAAACCGCTCAGTGGCAGCTGTAAGAGAAGTAGTGAAAGACTATGGTGGAAAGATGGCAGATCCAGGATCTGTTATGTTCAAGTTCAGACGTGCTCGAGTTGTGAATGTTAAGGCCTCCGACGTTGACAAAGATCAGCTTCTCACCATATCTTTAGATGCTGGCGCAGAAGATGTTATTGAACCTCCAGAATATGAAGATGATACAGAAGAAGATAAGTTAGAAAGATATTACAAAATTGTGACTTCCACAGAGAACTACTCGGGAATACTTTCCAAGTTACGGGAAGAAAACATAAAGTTCGAACCTGACAGTGGTTCTGAGCTACTTCCTATAAGCTCTATTGAGAGAAGAACAGAATGA 2379 46.95 MRSDRAFRRLHKLVQQQRPLLVFLSETKVHSSRFELIKVKLGFDGCFSVNSVGRSGGLALLWDSTVRRPGVTHLDFSKSDHRPILLSMLPPSQLREGCGRKIRRFEDVWLMYPEFRKVVEESWQSGAAEASSVGLMRATERCLASLVKWGRGKVWRYSDRIREASAQSGLRVFLAYLLIWQPISRRLGAQDSIIWHFEKSGIYSVKSVIKWLPCGSDAHFGSKPIILLGFAAWLVARMLENGDPKSVICDAGFGSLMNRLRSDNLSLLLRDAREELGWERFEDLVVLLWAIWGCRNKVKFKGEGLSWELPVWTAGYLEVYRRAKEQIPVERRNRADRESVKWVAPPEGWYKVNVDAAFDGEKMVAGAGLVVRNHSGEVLAAAVRFHGFVRSADMAEGWAATDGLKLATEMGFFPAMIKTDSRRVFEILRGERTELSDLSILLVDALDEWPLSWPLQSVFSLREGNRLAHHLASLAIHEQSDCVWIEEVSAKSKSKAYDCQIVFALHRLKLSAKLQRPPCQMGCKKGLLWNGLCSSSSLAAEASSFPLWAFESKLKCRGNQVRRIWMSPVCMGRRSCKIAGRKGAQDAKKAKLYSRIGKEVVSAVKKGGTSPISNTLLAALLEKAKELDVPKEILDRNIKRASEKGQEAYIEKIYEVYGYGGASMVVEVSTDKINRSVAAVREVVKDYGGKMADPGSVMFKFRRARVVNVKASDVDKDQLLTISLDAGAEDVIEPPEYEDDTEEDKLERYYKIVTSTENYSGILSKLREENIKFEPDSGSELLPISSIERRTE 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32585564 32595198 - Maker00034096 Lcy13g1417 651722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1417 792 Gene3D - 349 478 IPR036397 GO:0003676(InterPro)
Lcy13g1417 792 Gene3D - 574 648 IPR017856 -
Lcy13g1417 792 SUPERFAMILY Ribonuclease H-like 348 479 IPR012337 -
Lcy13g1417 792 FunFam Putative transcriptional regulatory protein 700 785 - -
Lcy13g1417 792 Pfam Reverse transcriptase-like 353 474 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy13g1417 792 Pfam TACO1/YebC second and third domain 649 778 IPR048300 -
Lcy13g1417 792 CDD RNase_H_like 352 472 IPR044730 -
Lcy13g1417 792 Gene3D - 652 788 IPR026564 -
Lcy13g1417 792 PANTHER UNCHARACTERIZED 552 788 IPR002876 GO:0009507(PANTHER)
Lcy13g1417 792 Gene3D - 700 785 IPR026564 -
Lcy13g1417 792 Pfam TACO1/YebC protein N-terminal domain 574 643 IPR049083 -
Lcy13g1417 792 SUPERFAMILY YebC-like 576 775 IPR029072 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1417 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1417 Lcy-Chr13:32585564 Lcy8g0907 Lcy-Chr8:32619829 3.91E-94 dispersed
Lcy13g1417 Lcy-Chr13:32585564 Lcy2g1487 Lcy-Chr2:18775774 4.81E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g290 . . . . . . . . Cmo05g00617 . . Cma05g00592 . . . . . Bhi04g00849 . . . . . Lcy13g1417 . . . . . . . . . Cone17ag1125 Cone20ag0597 . . . Cme03g01745 Blo17g00068 . . Bda13g01331 Bpe14g00517 . . . . . . . . . Car05g00536 Cpe11g00518 . . . . . . . . Cla08g01221 Cam08g1680 Cec08g1258 Cco08g1378 Clacu08g1378 . Cre08g1163 Lsi08g01084 . Chy03g01250 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006621 1 7 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37