Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1421 ATGCCTGAGCTCCGTAGCAAACCACGCAGGAGCCGGGTGTCCGAAGACCCAGTCCCGATTGCGCACCAGACGCCCGTTAAGCTAACTGTCAGAACACGCCACCGAGGGCAACCCGCTAAACGCAGCGGAGGGAAGAGTATTAAGGAGGGGAAAGACGCGATCGAGGCCGATGGTGACAGGGATATTGTGAACCCTGGAATCGGTCTTGAAACGAGGCTGTGTCAGAGCAAAGGCGAAGTTGGGAAGGACAAAGACCTACTGCAGGTTGGTGTTAGAGCCATGGATGAGTTCGATAGCGGCGGACGGAACGGCGATAAGGGTCCTGCTGCCGAGGATGAAGGCACCACTACTCCTCTTCCGGAGAAGGTTCAGGTTGGTGGTTCTCCATTATATAAAGTAGAAAGAAAACTAGGGAAAGGAGGTTTTGGACAGGTGTATGTGGGTCGACGCATGGGTCCCATGACCTTGAATGAAAGATCTGGCTCTGGAGCTGTGGAGGTAGCCTTAAAATTTGAGCATAGAAGTAGTAAAGGGTGCAACTATGGACCTCCTTATGAGTGGCAGGTTTACAATGCACTAGGTGGTAGCCATGGTGTGCCACGAGTTCATTACAAGGGTCGGCAAGGTGACTACTATGTCATGGTTATGGACATGCTTGGACCTAGTCTCTGGGATGTCTGGAATAACAATGCTCACACGATGTCAATTGAAATGGTAGCATGTATCGCAATTGAGGCAATCTCCATATTAGAGAAGATGCATTCTAGAGGGTATGTGCATGGTGACGTGAAGCCTGAAAACTTTTTGCTTGGTCCTCCTGGAACCCCAGAAGAGAAAAAGTTGTTTCTTGTAGATCTTGGTTTAGCAACCAAGTGGCGAGATAGTTCAACTGGTCAACATGTTGAGTATGATCAACGGCCAGATGTTTTCCGGGGAACAGTTCGGTATGCTAGTGTGCATGCACATCTTGGCAGAACCGCTAGTCGGAGAGATGACTTGGAATCACTTGCTTACACTCTCGTTTTTCTTCTTCGTGGTCGGCTGCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTCCTTGTGTCCAAGAAGAAGATGGCTACTTCGTCTGAAACTTTGTGCTGTTTTTGCCCTCAGCCTTTTAGACAGTTTGTTGAGTATGTTGTGAATTTAAAATTTGATGAAGAGCCAAACTATGCAAGATATATCTCCCTCTTTGATGGGATCGTCGGTCCGAATCCAGACATCCGTCCAATTAACACAGATGGTGCACAGAAAGTTGGGCATAAGAGAGGAAGGCTATCCATGGAGGAGGAGGATGATGAACAACCAAAGAAGAAGGTTCGAGTGGGGATGCCTGCAACACAATGGATTAGTATATATAATGCCCGTAGACCAATGAAGCAAAGATATCACTATAACGTTGCTGATATGAGGCTCTCTCAGCACATTGAGAAAGGAAATGAAGATGGTTTATTTATTAGCTGCGTTGCTTCATGTTCGAACCTTTGGGCCCTTATTATGGATGCTGGAACTGGATTTACAGCTCAAGTTTATGAACTCTCACCATACTTTCTTCACAAGGAGTGGATCATGGAACAGTGGGAGAAAAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGAAGCTCGTTGGTAGTAATGTCCAAAGGGACTCAGTACCTGCAGCAATCTTATAAAGTCAGCGATTCATTTCCCTTCAAGTGGATAAATAAGAAATGGAGGGAGGGATTTTATGTTACTGCCATGGCTACTGCCGGTAGTAGATGGGCAATTGTCATGTCACGTGGTGCAGGATTTTCTGACCAGGTGGTGGAACTAGATTTCCTGTATCCTAGTGAAGGTATTCATCGCAGGTGGGATAGTGGTTACCGCATCACATCAACTGCAGCAACTTTGGACCAGGCTGCTTTTGTTCTGAGTGTGCCTAGGAGAAAGCCTGCTGATGAAACTCAAGAAACACTCCGAACATCCGCCTTTCCTAGTACACATGTCAAGGAGAAATGGGCAAAAAACCTTTATATTGCATCTATTTGCTATGGCCGAACTGTTTCATGA 2085 46.43 MPELRSKPRRSRVSEDPVPIAHQTPVKLTVRTRHRGQPAKRSGGKSIKEGKDAIEADGDRDIVNPGIGLETRLCQSKGEVGKDKDLLQVGVRAMDEFDSGGRNGDKGPAAEDEGTTTPLPEKVQVGGSPLYKVERKLGKGGFGQVYVGRRMGPMTLNERSGSGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNAHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPEEKKLFLVDLGLATKWRDSSTGQHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVSKKKMATSSETLCCFCPQPFRQFVEYVVNLKFDEEPNYARYISLFDGIVGPNPDIRPINTDGAQKVGHKRGRLSMEEEDDEQPKKKVRVGMPATQWISIYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISCVASCSNLWALIMDAGTGFTAQVYELSPYFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDSGYRITSTAATLDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32626642 32634319 - Maker00034020 Lcy13g1421 651726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1421 694 CDD STKc_CK1 131 407 - -
Lcy13g1421 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1421 694 FunFam casein kinase 1-like protein HD16 104 450 - -
Lcy13g1421 694 PANTHER CASEIN KINASE-RELATED 130 538 IPR050235 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006897(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
Lcy13g1421 694 Pfam Protein kinase domain 131 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1421 694 MobiDBLite consensus disorder prediction 42 59 - -
Lcy13g1421 694 ProSitePatterns Protein kinases ATP-binding region signature. 137 170 IPR017441 GO:0005524(InterPro)
Lcy13g1421 694 MobiDBLite consensus disorder prediction 1 65 - -
Lcy13g1421 694 MobiDBLite consensus disorder prediction 1 16 - -
Lcy13g1421 694 MobiDBLite consensus disorder prediction 425 449 - -
Lcy13g1421 694 MobiDBLite consensus disorder prediction 95 124 - -
Lcy13g1421 694 Gene3D Transferase(Phosphotransferase) domain 1 105 456 - -
Lcy13g1421 694 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1421 694 SMART serkin_6 131 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1421 694 MobiDBLite consensus disorder prediction 418 449 - -
Lcy13g1421 694 SUPERFAMILY Protein kinase-like (PK-like) 131 413 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1421 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1421 Lcy-Chr13:32626642 Lcy3g2149 Lcy-Chr3:48412103 0 dispersed
Lcy13g1421 Lcy-Chr13:32626642 Lcy11g1672 Lcy-Chr11:40566075 9.87E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g5 . Blo12g01057 . Bda03g00159 . . . . Cmo05g00120 . . . . Car12g00229 Sed09g1609 Cpe07g00209 . Bhi04g00862 Tan02g2553 Cmetu03g1333 . Hepe10g0373 . Lcy13g1421 . . . . . . . . Cone7ag1308 . . . . . . . . . . . Bpe04g00141 . . . . . . Cma12g00246 . . . . Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . Cla08g01215 Cam08g1676 Cec08g1254 Cco08g1373 Clacu08g1374 . Cre08g1159 . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000235 6 9 5 7 6 4 9 4 4 5 4 4 8 4 4 7 4 6 8 4 4 4 4 4 4 4 4 11 5 5 161
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65576 None None None None Lcy PK