Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1431 ATGGAAGCTCCAGAATATTTCCAGAACAATGGCTACTGCTCCCAATTCGCCGCCGACAACGACGCCCCCGCCGCCGTCGGAGACCATTTCATCGTCGAGGAGCTTCTCGATTTCTCCAACCACGACGCCGACGCCGGAGGATTGTTCAACAATGCCACCGGCTGCTTCCTCAATAATGGAAACTCCGCCTCCGCCTCCGCCGACTCCTCCGCCCTCACCGTCGTCGAGAGCTGCAATTCCTCCAATTCCTTTTCGGTTTCCGAACCCAATTCCTTTCTCGAAGACATTAGTGCCTCTAATTTAGCCGACGCCCATTTCTCCGACGAACTCTGCATTCCGTTAGATGATTTAGCTGAGTTGGAATGGCTTTCAAATTTCGTAGAGGAATCATTTTCCAGTGAGGACATGCAAAAGTTAGAACTCATCTCCGGAGTCAAAGTCAAATCCGACGGACCCTCCCACTCCCGACAACCCACCACCGCCACCGCCGCCGTCTCCACCACCACCCACGCCCGAAACGCAGCCGAAATCTTCAAACCCGACATTGTCTCAGTTCCGGCGAAGGCCCGCAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTCCCGCTCTCTCCGACCACCTCCTCGTCGGAATCCGACATCGCCCCCGCCGGACCACCGCAGCCGGTCAAAAAAATCCCGCCGAAGGCGGCGGCGACGGTGAAGAAGAAGGACTGCCCGGAGGCCGGAGCGTCCGCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACGGGCCCAATGGGCCCAAAGACGCTGTGTAACGCTTGCGGCGTTCGGTACAAATCCGGGCGCCTGGTGCCGGAGTACCGCCCCGCCGCCAGCCCCACCTTCGTCCTCACCAAACACTCCAACTCCCACAGGAAAGTTTTGGAGCTCCGGCGGCAGAAGGAGCTTCTCAGAGCCCAACAACAGCAACAGCAACAAGTGCTTTTGGATCACCATCACCATCACCGTCATCAGGATATGATCTTTGATTCATCCAACGGTGACGATTATCTCATCCATCAACACGTGGGCCCCGATTACCGGCAGCTGATCTGA 1122 58.2 MEAPEYFQNNGYCSQFAADNDAPAAVGDHFIVEELLDFSNHDADAGGLFNNATGCFLNNGNSASASADSSALTVVESCNSSNSFSVSEPNSFLEDISASNLADAHFSDELCIPLDDLAELEWLSNFVEESFSSEDMQKLELISGVKVKSDGPSHSRQPTTATAAVSTTTHARNAAEIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTSSSESDIAPAGPPQPVKKIPPKAAATVKKKDCPEAGASAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQQVLLDHHHHHRHQDMIFDSSNGDDYLIHQHVGPDYRQLI 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32789594 32791889 + Maker00033974 Lcy13g1431 651736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1431 373 ProSitePatterns GATA-type zinc finger domain. 258 283 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1431 373 Coils Coil 316 336 - -
Lcy13g1431 373 CDD ZnF_GATA 257 304 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1431 373 ProSiteProfiles GATA-type zinc finger domain profile. 252 288 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1431 373 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 254 316 - -
Lcy13g1431 373 PANTHER GATA TRANSCRIPTION FACTOR 30 324 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lcy13g1431 373 Pfam GATA zinc finger 258 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1431 373 Gene3D - 250 336 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy13g1431 373 PIRSF Txn_fac_GATA_plant 14 349 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Lcy13g1431 373 MobiDBLite consensus disorder prediction 189 239 - -
Lcy13g1431 373 FunFam GATA transcription factor 249 335 - -
Lcy13g1431 373 MobiDBLite consensus disorder prediction 195 221 - -
Lcy13g1431 373 SMART GATA_3 252 302 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0437 Lcy-Chr13:5050258 Lcy13g1431 Lcy-Chr13:32789594 1.84E-36 dispersed
Lcy13g1431 Lcy-Chr13:32789594 Lcy3g2144 Lcy-Chr3:48366080 7.49E-77 dispersed
Lcy13g1431 Lcy-Chr13:32789594 Lcy9g1628 Lcy-Chr9:41421831 2.54E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19392 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1431 - - - 0.0