Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1431 ATGGAAGCTCCAGAATATTTCCAGAACAATGGCTACTGCTCCCAATTCGCCGCCGACAACGACGCCCCCGCCGCCGTCGGAGACCATTTCATCGTCGAGGAGCTTCTCGATTTCTCCAACCACGACGCCGACGCCGGAGGATTGTTCAACAATGCCACCGGCTGCTTCCTCAATAATGGAAACTCCGCCTCCGCCTCCGCCGACTCCTCCGCCCTCACCGTCGTCGAGAGCTGCAATTCCTCCAATTCCTTTTCGGTTTCCGAACCCAATTCCTTTCTCGAAGACATTAGTGCCTCTAATTTAGCCGACGCCCATTTCTCCGACGAACTCTGCATTCCGTTAGATGATTTAGCTGAGTTGGAATGGCTTTCAAATTTCGTAGAGGAATCATTTTCCAGTGAGGACATGCAAAAGTTAGAACTCATCTCCGGAGTCAAAGTCAAATCCGACGGACCCTCCCACTCCCGACAACCCACCACCGCCACCGCCGCCGTCTCCACCACCACCCACGCCCGAAACGCAGCCGAAATCTTCAAACCCGACATTGTCTCAGTTCCGGCGAAGGCCCGCAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTCCCGCTCTCTCCGACCACCTCCTCGTCGGAATCCGACATCGCCCCCGCCGGACCACCGCAGCCGGTCAAAAAAATCCCGCCGAAGGCGGCGGCGACGGTGAAGAAGAAGGACTGCCCGGAGGCCGGAGCGTCCGCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACGGGCCCAATGGGCCCAAAGACGCTGTGTAACGCTTGCGGCGTTCGGTACAAATCCGGGCGCCTGGTGCCGGAGTACCGCCCCGCCGCCAGCCCCACCTTCGTCCTCACCAAACACTCCAACTCCCACAGGAAAGTTTTGGAGCTCCGGCGGCAGAAGGAGCTTCTCAGAGCCCAACAACAGCAACAGCAACAAGTGCTTTTGGATCACCATCACCATCACCGTCATCAGGATATGATCTTTGATTCATCCAACGGTGACGATTATCTCATCCATCAACACGTGGGCCCCGATTACCGGCAGCTGATCTGA 1122 58.2 MEAPEYFQNNGYCSQFAADNDAPAAVGDHFIVEELLDFSNHDADAGGLFNNATGCFLNNGNSASASADSSALTVVESCNSSNSFSVSEPNSFLEDISASNLADAHFSDELCIPLDDLAELEWLSNFVEESFSSEDMQKLELISGVKVKSDGPSHSRQPTTATAAVSTTTHARNAAEIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTSSSESDIAPAGPPQPVKKIPPKAAATVKKKDCPEAGASAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQQVLLDHHHHHRHQDMIFDSSNGDDYLIHQHVGPDYRQLI 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32789594 32791889 + Maker00033974 Lcy13g1431 651736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1431 373 ProSitePatterns GATA-type zinc finger domain. 258 283 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1431 373 Coils Coil 316 336 - -
Lcy13g1431 373 CDD ZnF_GATA 257 304 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1431 373 ProSiteProfiles GATA-type zinc finger domain profile. 252 288 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1431 373 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 254 316 - -
Lcy13g1431 373 PANTHER GATA TRANSCRIPTION FACTOR 30 324 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lcy13g1431 373 Pfam GATA zinc finger 258 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1431 373 Gene3D - 250 336 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy13g1431 373 PIRSF Txn_fac_GATA_plant 14 349 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Lcy13g1431 373 MobiDBLite consensus disorder prediction 189 239 - -
Lcy13g1431 373 FunFam GATA transcription factor 249 335 - -
Lcy13g1431 373 MobiDBLite consensus disorder prediction 195 221 - -
Lcy13g1431 373 SMART GATA_3 252 302 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1431 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0437 Lcy-Chr13:5050258 Lcy13g1431 Lcy-Chr13:32789594 1.84E-36 dispersed
Lcy13g1431 Lcy-Chr13:32789594 Lcy3g2144 Lcy-Chr3:48366080 7.49E-77 dispersed
Lcy13g1431 Lcy-Chr13:32789594 Lcy9g1628 Lcy-Chr9:41421831 2.54E-108 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1431 . 81 374 C2C2-Gata Transcription Factor Family AT5G25830 52.9 1.4e-69 260.8
Lcy6g0914 . 13 262 C2C2-Gata Transcription Factor Family AT3G50870 52.3 2.8e-37 153.3
Lcy6g0944 . 99 372 C2C2-Gata Transcription Factor Family AT3G51080 50.7 2.0e-54 210.3
Lcy1g0653 . 112 288 C2C2-Gata Transcription Factor Family AT4G36240 51.9 9.7e-41 164.5
Lcy12g1875 . 19 543 C2C2-Gata Transcription Factor Family AT4G17570 50.1 2.9e-122 436.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19392 None None None None Lcy TF