Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g1431 | ATGGAAGCTCCAGAATATTTCCAGAACAATGGCTACTGCTCCCAATTCGCCGCCGACAACGACGCCCCCGCCGCCGTCGGAGACCATTTCATCGTCGAGGAGCTTCTCGATTTCTCCAACCACGACGCCGACGCCGGAGGATTGTTCAACAATGCCACCGGCTGCTTCCTCAATAATGGAAACTCCGCCTCCGCCTCCGCCGACTCCTCCGCCCTCACCGTCGTCGAGAGCTGCAATTCCTCCAATTCCTTTTCGGTTTCCGAACCCAATTCCTTTCTCGAAGACATTAGTGCCTCTAATTTAGCCGACGCCCATTTCTCCGACGAACTCTGCATTCCGTTAGATGATTTAGCTGAGTTGGAATGGCTTTCAAATTTCGTAGAGGAATCATTTTCCAGTGAGGACATGCAAAAGTTAGAACTCATCTCCGGAGTCAAAGTCAAATCCGACGGACCCTCCCACTCCCGACAACCCACCACCGCCACCGCCGCCGTCTCCACCACCACCCACGCCCGAAACGCAGCCGAAATCTTCAAACCCGACATTGTCTCAGTTCCGGCGAAGGCCCGCAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTCCCGCTCTCTCCGACCACCTCCTCGTCGGAATCCGACATCGCCCCCGCCGGACCACCGCAGCCGGTCAAAAAAATCCCGCCGAAGGCGGCGGCGACGGTGAAGAAGAAGGACTGCCCGGAGGCCGGAGCGTCCGCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACGGGCCCAATGGGCCCAAAGACGCTGTGTAACGCTTGCGGCGTTCGGTACAAATCCGGGCGCCTGGTGCCGGAGTACCGCCCCGCCGCCAGCCCCACCTTCGTCCTCACCAAACACTCCAACTCCCACAGGAAAGTTTTGGAGCTCCGGCGGCAGAAGGAGCTTCTCAGAGCCCAACAACAGCAACAGCAACAAGTGCTTTTGGATCACCATCACCATCACCGTCATCAGGATATGATCTTTGATTCATCCAACGGTGACGATTATCTCATCCATCAACACGTGGGCCCCGATTACCGGCAGCTGATCTGA | 1122 | 58.2 | MEAPEYFQNNGYCSQFAADNDAPAAVGDHFIVEELLDFSNHDADAGGLFNNATGCFLNNGNSASASADSSALTVVESCNSSNSFSVSEPNSFLEDISASNLADAHFSDELCIPLDDLAELEWLSNFVEESFSSEDMQKLELISGVKVKSDGPSHSRQPTTATAAVSTTTHARNAAEIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTSSSESDIAPAGPPQPVKKIPPKAAATVKKKDCPEAGASAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQQVLLDHHHHHRHQDMIFDSSNGDDYLIHQHVGPDYRQLI | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 32789594 | 32791889 | + | Maker00033974 | Lcy13g1431 | 651736 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g1431 | 373 | ProSitePatterns | GATA-type zinc finger domain. | 258 | 283 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy13g1431 | 373 | Coils | Coil | 316 | 336 | - | - | |
Lcy13g1431 | 373 | CDD | ZnF_GATA | 257 | 304 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy13g1431 | 373 | ProSiteProfiles | GATA-type zinc finger domain profile. | 252 | 288 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy13g1431 | 373 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 254 | 316 | - | - | |
Lcy13g1431 | 373 | PANTHER | GATA TRANSCRIPTION FACTOR | 30 | 324 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Lcy13g1431 | 373 | Pfam | GATA zinc finger | 258 | 292 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy13g1431 | 373 | Gene3D | - | 250 | 336 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Lcy13g1431 | 373 | PIRSF | Txn_fac_GATA_plant | 14 | 349 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Lcy13g1431 | 373 | MobiDBLite | consensus disorder prediction | 189 | 239 | - | - | |
Lcy13g1431 | 373 | FunFam | GATA transcription factor | 249 | 335 | - | - | |
Lcy13g1431 | 373 | MobiDBLite | consensus disorder prediction | 195 | 221 | - | - | |
Lcy13g1431 | 373 | SMART | GATA_3 | 252 | 302 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0437 | Lcy-Chr13:5050258 | Lcy13g1431 | Lcy-Chr13:32789594 | 1.84E-36 | dispersed | |
Lcy13g1431 | Lcy-Chr13:32789594 | Lcy3g2144 | Lcy-Chr3:48366080 | 7.49E-77 | dispersed | |
Lcy13g1431 | Lcy-Chr13:32789594 | Lcy9g1628 | Lcy-Chr9:41421831 | 2.54E-108 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19392 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g1431 | - | - | - | 0.0 |