Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1433 ATGCTCTTCTTCCTCCGACACCGTTATCTGAGACCATTGGCGAGTAGAGGAAGAGAATTTGAGAGAAAAGTTTTGGGATTAATGGAGGGTGCAATGAAGAAGACAATGAGTAATGGTAGTGTTCATATGGAGATGGAGGAAATTGACAATAAGTTTGAGGAAGCTTATGGAGAACATAATGCCACTGAAGATCAGCTCATTACCCCTTGGACTGTCTCTGTTGCTAGTGGCTACTCGTTACTGCGTGATCCGATCTACAACAAAGGACTTGCCTTTTCTGAGAAAGAGAGAGATGCTCATTACTTGCGTGGCTTGTTGCCACCAGCAGTTCTTGATCAGGAACTTCAGGAAAGGAGAATGATGCACAATCTTCGCAACTATGAAGTTCCTTTACACAGATATATTGCCATGATGGATCTTCAGGAGAGAAATGAAAGGCTGTTCTACAAGCTTCTCATCGACAACGTTGAAGAACTGCTTCCAGTTGTGTACACTCCAACCGTTGGCGAAGCTTGCCAGAAGTATGGTAGCATTTACAGGCGACCTCAGGGCCTTTTCATCAGCTTGAAAGAGAAGGGAAAGATTCTTGAAGTATTGAAGAACTGGCCAGAAAGGAACATTCAAGTCATTGTTGTAACCGACGGTGAGCGGATTCTAGGCCTTGGTGATCTCGGATGCCAGGGCATGGGAATTCCTGTGGGAAAGCTTTCTTTGTATACAGCACTTGGAGGAATTCGACCTTCAGCTTGCTTGCCCATCACCATTGACGTCGGTACGAACAATGAGCAGCTTCTAAACGATGAGTTTTACATTGGCCTTCGACATAAACGTGCCAGAGGACAGGAATACATGGAGCTTTTAGATGAGTTCATGTATGCAGTAAAGAAGAATTATGGAGAGAAAGTCCTGATACAGTTTGAAGATTTTGCAAACCACAATGCATTCGAGTTGCTTTCAAGATATAGCTCGTCACACCTGGTGTTTAACGACGACATTCAGGGTACAGCATCTGTCGTGGTAGCAGGACTACTTGCAGCTCTTAAACTTGTTGGAGGGACATTGGCTGACCACACTTTTCTGTTCCTTGGAGCTGGAGAGGCTGGAACTGGTATAGCTGAGCTTATTGCTTTGGAGATTTCAAAACAGACCCAAGCTCCAGTTGAAGAGACTCGCAAGAAGATCTGGCTTGTGGACTCAAAGGGGCTCATCGTTCGATCGCGCTTTGAATCCCTTCAACACTTTAAGAAGCCATGGGCTCATGACCATGAATCTATCAAGGATCTTTTGGGTGCCGTCCAGGCAATCAAGCCAACGGTGTTGATAGGAACATCTGGTGTTGGAAAGACATTTACAAAGGAAGTTGTGGAGGCCATGGCATCCCTCAATGAGAAACCACTTATCCTTGCTCTCTCAAATCCAACGTCGCAGTCCGAGTGTACAGCCGAAGAGGCTTATACATGGAGCCAGGGCCGAGCGATCTTCGCTAGCGGTAGTCCATTTGATCCGGTCGAATATGATGGGAAAGTCTTTGTACCTGGCCAGGCCAACAATGCTTACATATTCCCTGGATTTGGCTTGGGTCTGATCATGTCGGGTACTATTCGCGTGCACGATGACATGCTCTTGGCAGCCTGTAAGTGA 1641 46.07 MLFFLRHRYLRPLASRGREFERKVLGLMEGAMKKTMSNGSVHMEMEEIDNKFEEAYGEHNATEDQLITPWTVSVASGYSLLRDPIYNKGLAFSEKERDAHYLRGLLPPAVLDQELQERRMMHNLRNYEVPLHRYIAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLFISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEQLLNDEFYIGLRHKRARGQEYMELLDEFMYAVKKNYGEKVLIQFEDFANHNAFELLSRYSSSHLVFNDDIQGTASVVVAGLLAALKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTQAPVEETRKKIWLVDSKGLIVRSRFESLQHFKKPWAHDHESIKDLLGAVQAIKPTVLIGTSGVGKTFTKEVVEAMASLNEKPLILALSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPVEYDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDMLLAACK 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32824416 32829404 + Maker00034130 Lcy13g1433 651738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1433 546 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 332 545 IPR036291 -
Lcy13g1433 546 Gene3D - 330 546 - -
Lcy13g1433 546 FunFam Malic enzyme 75 329 - -
Lcy13g1433 546 PRINTS Malic enzyme signature 359 375 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Lcy13g1433 546 PRINTS Malic enzyme signature 147 171 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Lcy13g1433 546 PRINTS Malic enzyme signature 243 265 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Lcy13g1433 546 PRINTS Malic enzyme signature 207 236 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Lcy13g1433 546 PRINTS Malic enzyme signature 328 344 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Lcy13g1433 546 PRINTS Malic enzyme signature 462 478 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Lcy13g1433 546 PRINTS Malic enzyme signature 303 321 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Lcy13g1433 546 Pfam Malic enzyme, N-terminal domain 141 321 IPR012301 GO:0004470(InterPro)|GO:0016616(InterPro)
Lcy13g1433 546 Gene3D - 75 329 IPR037062 GO:0004470(InterPro)|GO:0016616(InterPro)
Lcy13g1433 546 CDD NAD_bind_1_malic_enz 332 544 - -
Lcy13g1433 546 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 54 331 IPR046346 -
Lcy13g1433 546 SMART malic_2 141 322 IPR012301 GO:0004470(InterPro)|GO:0016616(InterPro)
Lcy13g1433 546 Pfam Malic enzyme, NAD binding domain 332 545 IPR012302 GO:0051287(InterPro)
Lcy13g1433 546 ProSitePatterns Malic enzymes signature. 328 344 IPR015884 -
Lcy13g1433 546 PANTHER MALIC ENZYME-RELATED 17 545 - GO:0004470(PANTHER)|GO:0004473(PANTHER)|GO:0006090(PANTHER)|GO:0006108(PANTHER)|GO:0009507(PANTHER)
Lcy13g1433 546 SMART Malic_M_2 332 546 IPR012302 GO:0051287(InterPro)
Lcy13g1433 546 PIRSF ME 38 546 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Lcy13g1433 546 FunFam Malic enzyme 334 470 - -
Lcy13g1433 546 Coils Coil 45 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1433 K00029 - - csv:101218724 1036.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1433 Lcy-Chr13:32824416 Lcy2g0858 Lcy-Chr2:7818515 1.83E-295 dispersed
Lcy13g0652 Lcy-Chr13:9018512 Lcy13g1433 Lcy-Chr13:32824416 3.19E-133 transposed
Lcy13g1433 Lcy-Chr13:32824416 Lcy3g2151 Lcy-Chr3:48423747 5.83E-276 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g7 . . . . . . . . . . . . . Car12g00224 . Cpe07g00204 . Bhi04g00869 Tan06g0248 . . Hepe10g0379 . Lcy13g1433 . . . . . . . . . . . . . . . Blo17g00302 . . Bda13g01324 . . . Bma02g00080 . . . . Cma12g00241 . . . . . . . . . . . Cla08g01208 Cam08g1670 Cec08g1248 Cco08g1365 Clacu08g1367 . Cre08g1152 . Csa02g02253 . .