Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1434 ATGGAGGACCAACGGCTGTTGGAGAGGGAGAGGCACCAGATCGAGCAGATTCTGCAGCTTGACAATGAAGAGTTGCAAGTTGAGGAAGTAGACTACCTCCCGGACTCCGATGACGATCGCGATGCTATACACCTGGGAAACTTAGAACAGGCAATTGTCATCAAAGACACTGACATCATCCTGTTTTTTTTTCTGGCTGGCAGCAATGGTAATAGTGGTACTGAGGCCTTTGCAGAATTTACTTTCAATTCCTCTTTGGCATCTTTGCATACTTATCTTGGTGAGGTTGAGGATGCTCATCACAGAATGGCTTTCTTGGATGGTGGTGCCATCCTGAACCTTCCTGTATTTTATCTTGAAGGAGTTGTGTTGTTCCCAGAAGCTACTCTACCTCTCAGGGTGATACAATCAAATTTTATTGCTGCCATTGAGAGAGTATTGACTCACTTTGACACCCCTAATACCATAGGTGTGGTTCACGTCTCCTTGGATTCTGATAATGAGAGACTACGTTTTGCAAATATTGGGACAACTGCCGAGGTTCGGCAGTTTCGGAGGTTGGAGGACGGTTCACTCAATGTTCTTGCTAGAGGGAAGCAACGATTTCGCCTTAGACGCCGTTGGATTGATGTTGAAGGAGTGCCGTGTGGAGAAGTTCAAATTATCCAGGAAGATTTGCCATTGAGAACTCCACGGGATGCTTTGGGAGAATTGGCTCCAAGGAGTACTGTTCAGCGCCACAGTCTCTCATGTGCATTGGCTTCATATTCTTCTTGCTCTAGACCATTCACGTCCAGGGATGAGGAGGATGATTCAGCCTCTAATTCTGAAGAAAGCTTTGAACGTGAACTTTCATTGAGAGAGAGGAAAATCCACCAAGCAGCAATCGATTCCAGTGAGTCTTGTAGTGATGAGGAGATATCTGGGTCAGAGGCAGAACACCAACATGCGATGTCACATCTGAATGACTCTGATTCTTTAGGGTCAATGCATTCTGACTATGAGAAGGAAAATGAAAAACCTGCCCCTGATAGGGGAAAGAGTTCCACATCAGCTAGGGAATCTAGTGAGAGGAAAGAACTCAAAAGATGTCGAAGAAACTCAAGTTTTAATATGATGCATGGGGTTTCGAAAGCATTTTGGCCGTATTGGGTTTACTCAATGTATGACTCATATTGTCTTGCTGAAAAAGCCGCAGCTATGTGGAAGCAGATAGTGGGGGCACCAAACATGGATGGTTTTGTGAAGAATCCAGACATCTTATCTTTCTATATTGCTAGTAAGATTCCAGTTTCTGAATCTACTAGACAAGAGCTCTTGGAGATCGATGGCATTTCATATAGACTGCGCCGGGAAGTTGAGTTACTCAAGTCTATTGATATCATCCAATGCAAAACCTGTAAGACAGTTATAGCCAAGCGCAGTGATATGTTGGTGATGTCTAGTGACGGTCCACTCGGTGCTTATGTGAACCCCCATGGTTATGTGCATGAAATAATGACTCTTTACAGAGCAAATGGCTTAGCACTTAGAGGAAGAGCTGAGACAGAATACAGTTGGTTCCCTGGGTACGCATGGACAATCTCAATCTGTGCCACTTGTGAAACTCAATTAGGATGGCTTTTTACTGCCACAAACAGGAATCTGAAACCCAGATCGTTTTGGGGAATACGCAGTTCCCAGTTAGCCGACGCCACACGTTAA 1704 44.66 MEDQRLLERERHQIEQILQLDNEELQVEEVDYLPDSDDDRDAIHLGNLEQAIVIKDTDIILFFFLAGSNGNSGTEAFAEFTFNSSLASLHTYLGEVEDAHHRMAFLDGGAILNLPVFYLEGVVLFPEATLPLRVIQSNFIAAIERVLTHFDTPNTIGVVHVSLDSDNERLRFANIGTTAEVRQFRRLEDGSLNVLARGKQRFRLRRRWIDVEGVPCGEVQIIQEDLPLRTPRDALGELAPRSTVQRHSLSCALASYSSCSRPFTSRDEEDDSASNSEESFERELSLRERKIHQAAIDSSESCSDEEISGSEAEHQHAMSHLNDSDSLGSMHSDYEKENEKPAPDRGKSSTSARESSERKELKRCRRNSSFNMMHGVSKAFWPYWVYSMYDSYCLAEKAAAMWKQIVGAPNMDGFVKNPDILSFYIASKIPVSESTRQELLEIDGISYRLRREVELLKSIDIIQCKTCKTVIAKRSDMLVMSSDGPLGAYVNPHGYVHEIMTLYRANGLALRGRAETEYSWFPGYAWTISICATCETQLGWLFTATNRNLKPRSFWGIRSSQLADATR 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32831081 32835692 - Maker00034028 Lcy13g1434 651739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1434 567 MobiDBLite consensus disorder prediction 260 281 - -
Lcy13g1434 567 FunFam ATP-dependent protease La domain-containing protein 94 222 - -
Lcy13g1434 567 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 461 559 IPR004910 -
Lcy13g1434 567 ProSiteProfiles CULT domain profile. 459 566 IPR034750 -
Lcy13g1434 567 Gene3D Peptide methionine sulfoxide reductase. 455 567 - -
Lcy13g1434 567 Gene3D - 94 222 IPR046336 -
Lcy13g1434 567 PANTHER CEREBLON 37 556 - GO:0016567(PANTHER)|GO:0031464(PANTHER)
Lcy13g1434 567 SUPERFAMILY PUA domain-like 113 457 IPR015947 -
Lcy13g1434 567 MobiDBLite consensus disorder prediction 329 361 - -
Lcy13g1434 567 Pfam ATP-dependent protease La (LON) substrate-binding domain 113 457 IPR003111 -
Lcy13g1434 567 FunFam Lon protease homolog 390 454 - -
Lcy13g1434 567 Gene3D - 390 454 - -
Lcy13g1434 567 SMART lon_5 113 458 IPR003111 -
Lcy13g1434 567 FunFam Blast:Protein cereblon homolog 455 567 - -
Lcy13g1434 567 ProSiteProfiles Lon N-terminal domain profile. 114 460 IPR003111 -
Lcy13g1434 567 MobiDBLite consensus disorder prediction 295 361 - -
Lcy13g1434 567 CDD CRBN_C_like 462 562 IPR034750 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1434 K11793 - - csv:101218954 976.081
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g8 . . . . . . . . . . . . . Car12g00223 Sed01g1255 Cpe07g00203 . Bhi04g00871 Tan02g2544 Cmetu03g1530 . . . Lcy13g1434 . . . . . . . . . . . . . . . . Blo18g00311 Bda01g00940 . . . . . . . . . Cma12g00240 . . . . . . . . . . . Cla08g01207 Cam08g1669 Cec08g1247 Cco08g1364 Clacu08g1366 . Cre08g1151 . Csa02g02252 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009150 1 2 1 0 1 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 34