Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1443 ATGGGAACAAGTTTCAGGCCAAATCTCAAGTGGGCTTTTCAATTTCAGACTCATTCTCGCAAGAGCTCCCCTTCCAAGCTTTCTCCATATGCCTCTAAGGGCAGGGAAGCTTCTTTCAATTCAGCAAGGCTTTCATTCTTCTCTGCTATTTGTGAGGAAGGAGAATCGATCTCTAGAGAAACCTTGAAAACATACACTTGCTTGTCTGAAGCTCCCCAAACCTCAGCTGATGATTTTTTAGATTTGGAAGAGATAGAGATAAACAGTAGGACAAAGTCACTCAATCATTTGCATTACGGGATAAAAAATACCGGGCGATCCAAGGTAGACGACAATTTTTCTTCCTGTACAAGCTTGCCTACTGGCAAGGCGTCACCTTTTGGAATGTTAATGGAAAACCTTGATGTTTTGGAGGGAACTTTTACTGAATCAGGCATGCTAAGCTTGGAAAGAGATATTGTGCTGCAACTAACGAAACTTGGAGCTTTGGAGTTTTTCAATACCTGTCTATCTAGGACGCTTAAAACTTCAAGTTTTCATGATTTGTCAGACTTGCCCCTTGAGGATGGTGGAGATCATAATCTAAACCAGAAAACTGACGACCACAAAGAAGATATCATAGTTTACTCTGGAAAAAGAGCAGGAAGAAGATCAGTAAAAAAGAGAGCACTGGATAATGCTGATAAAGTTGCTTCCCAGCCAATAGCTACAAGAGCTGCTAAAGAAATTTTTCGTAATTCGGCTATATTTTCAAGGAAAAGAGCGTCTAATTCTAGAAAAAGAAGACTGATAGTTGCACGAAATGAAGCCGAAATGTCCACAGGGGTTAAGGTAGTTGCAAACTTAGAAAGAATTAAAGAAACTTTAGAAAAGGAATCCGGAAGAATAGCAAGCATGAGTTGTTGGGCCGATGCTGCTGGGGTTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGTTGGTTCTGCCAGGATGAGCTTTTAAGGAGCACTAATTCACTAGTTGTATTTCTTGCAAAGAAATATCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTGGAAAGGTTTGACCCTAAAAGGGGTTTTAGATTCTCGACCTATATCCAATACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGAAACTCGAGGGGAATTCAAATTCCATGGTCATTAACCAAGGCAATAAATCAGATACAGAAAGCTCGAAAAACCTTGAACAATGGTGGTAGGAGATATTCGGATGACGATATAGCAAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCTAGCAACTGTTTAAAAGTTGTGGGTTCAGTTGATCAGAAGATGGGTGATGGACTAAATATGAAATATATGGAATTTACAGCAGATACGTCAATACAGAGCCCAGAAGAGACCGTGAAACGGAAACTAATGAAGAAAGACATTTTGAATCTTCTTGAAGGGTTGGAATCGAGGGAGAGGCAGGTCCTGGCACTACGATACGGACTTGTGGATTTTCAACCGAAGTCGCTCGAGGAAATTGGAAAACTTCTGCACGTAAGCAAGGAGTGGGTTCGAAAAATAGAGAAGAAAGCCATGACAAAGCTGAAAGACGAAGAGACTGTGAGGAACTTGAGCCATTATTTGGATTGA 1680 41.43 MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYGIKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32896333 32900792 - Maker00033904 Lcy13g1443 651748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1443 559 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 123 558 IPR050239 -
Lcy13g1443 559 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 400 472 IPR013324 -
Lcy13g1443 559 CDD Sigma70_r4 488 546 - -
Lcy13g1443 559 Pfam Sigma-70 region 2 329 396 IPR007627 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Lcy13g1443 559 NCBIfam sigma-70 family RNA polymerase sigma factor 325 547 IPR014284 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Lcy13g1443 559 Pfam Sigma-70 region 3 407 481 IPR007624 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Lcy13g1443 559 Gene3D - 213 396 - -
Lcy13g1443 559 PRINTS Major sigma-70 factor signature 351 364 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Lcy13g1443 559 PRINTS Major sigma-70 factor signature 534 545 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Lcy13g1443 559 PRINTS Major sigma-70 factor signature 498 510 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Lcy13g1443 559 PRINTS Major sigma-70 factor signature 375 383 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Lcy13g1443 559 PRINTS Major sigma-70 factor signature 519 534 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Lcy13g1443 559 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 261 396 IPR013325 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Lcy13g1443 559 Gene3D - 399 550 - -
Lcy13g1443 559 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 458 548 IPR013324 -
Lcy13g1443 559 Pfam Sigma-70, region 4 494 546 IPR007630 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1443 K03093 - - csv:101206167 937.562
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1443 Lcy-Chr13:32896333 Lcy6g0093 Lcy-Chr6:871137 1.90E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g42 . . . . . . . . . . . . . Car12g00215 Sed01g1245 Cpe07g00198 . Bhi04g00884 Tan02g2529 . . Hepe10g0389 . Lcy13g1443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01198 Cam08g1660 Cec08g1237 Cco08g1356 Clacu08g1357 . Cre08g1144 . Csa02g02242 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007971 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 0 1 2 2 1 1 1 1 1 1 0 1 3 5 1 36