Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1447 ATGGCTTTTCACTCAGCTTTCTTTCTTCTTTTGTTCCTCACTTCCTCCATCTCTTCTTCTCAAGCTTTTACTGCTACCAACCAGTCTCAGTTCTTCTTTCTCATGCAAAAGACTGCCTCAGGAAAGTTCCTGTCTGATTGGGATTTTTCAGGAGGCAAATCCTTCTGCAACTTCACTGGAATCGAGTGCAATGACCGAGGTCACGTTGTTGGGATTGATATCTCTGGCCAGCCTCTCTCTGGTGGCTTCCCTGAAGATGTATGCTCTTACCTTCCAGAGCTGAGAGTTCTTCGTCTCGCTGGTACTGGTTTTCGGGGACGTTTTCCTCTGGGAATCACCAACTGCTCTCTACTTGAAGAGCTTGACATGAGCTCTTTGTATCTCAATGGGACAATCCCAGATTTTTCACAAATGAAACAACTTCGTGTACTTGACTTATCGTACAACTCCTTCACCAGTGACTTTCCCATGTCAGTTTTCGACCTTGTTAATCTTGAGGTGCTGAATTTCAATGAGAACTACAACCTCAACTTATGGAAGTTGCCTGTGAACATCTCCAGCCTGAAGAAGCTGAAATCTATGGTCTTGACAACCTGTATGTTAGACGGCGAAATCCCACGATCGATAGGGAACATGACGTCTCTTGTTGATCTTGAACTCAGTGGGAACTTTCTCAAGGGAGAGATTCCAAAAGAAATCTCCTTGCTGAAGAACTTGCAACAACTTGAACTCTATTACAATGAACTCACAGGGAACATACCAGAGGAGCTTGGGAATCTAACAGAGCTCGTGGACGTGGACATGTCGGTGAACCTTTTGACAGGAGAGCTTCCAGAATCTATTTGCAAACTCCCCAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAGTGTACTAGCCAACTCAACAACACTCACCATGCTATCACTTTATGACAATTTTCTTACAGGACAAATCCCACAAAAGTTGGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCGGAAAATCATCTTTCGGGACCATTGCCATCGGATATATGCAGAGGGGGTAAATTGCTGTACTTTCTCGTCCTGCAAAACAGGCTTTCTGGAGAAATACCGGCAAGTTTTGCTGAATGTGAGTCACTTTTAAGGTTCAGGATTAGTTCCAATCAGTTGGTGGGCACAATTCCTGAAGGAGTTTTGGCTCTCCCCCATGTTTCAATTATTGATGTTGCTCATAATAACCTCATTGGTTCCATTTCAAATTCAATCTCACAGGCAAGAAACTTGTCAGAATTGTTCTTGCAAAGAAACAGGATTTCTGGAGTTATCCCACCGGAGATTTCAGAAGCAACCAATCTGGTGAAGCTTGATCTTAGCTACAATCTTCTCTCCGGTCCAGTGCCGTCAGAGATTGGCAATCTGAAGAAGCTTAATCTGGTGATGTTACAAGGAAACCAACTGGATTCATCAATCCCCAGCTCATTCATGTCGTTGAAATCCCTCAACGTTCTTGATCTCTCAAACAATCGTTTATCTGGGAAAATCCCAGAAAGTTTGAGTGAATTGTTCCCAAGTTCTTTGAATTTTTCGAACAATCAACTCTCGGGTCCAATTCCTCTGTCTTTGATCAAACAAGGGTTGGCCGATAGCTTCTCCGGCAACCCAAATCTATGTGTTCCACCGGCGTATTTCATTTCACCGGATCAGAAATTCCCCATTTGCTCGCATTCTTCCTTCACAAAACGTCTAAATTTCATCTGGGCAATCGGAATTCCATTGCTCATCTTCATCACCGGCGCCGTCCTGTTTCTAAAACGCCGAATTACAACCAGAAAGACATCAGAGATCGCAAACGAAGAAACCCTCTCTTCATCATTCTTCCATTTGCAGAACTTCGACCAAGACTCGATCCTCGAAGCCATGGTGGAAAAGAACATCGTCGGCCACGGCGGATCAGGAACGGTCTACAAAATCGAGCTCGGAAAAGGAGAAATCGTCGCCGTGAAGAGGCTATGGAACCGAAGAGCGAAACATCTCTTCGACAAGGAATTGAAAACAGAGGTCGAAACCCTAGGAACCATAAGGCACAAGAACATCGTAAAACTCTATAGCTACTTTTCAGGTCTAAAGTGCAGCCTTCTGGTTTACGAATACATGCCAAACGGCAACCTATGGGACGCCCTTCATAAAGGGTGGATTCATCTCGATTGGCCCACGCGCCACCGCATCGCGGTGGGGATCGCCCAAGGCCTCGCCTATCTCCACCACGACCTCTCGCCGCCGGTAATGCACAGAGACATCAAAACCACAAACATTCTACTAGACGCAAATTACCAACCCAAAGTCGCAGATTTCGGCATAGCCAAAGTTCTACAAGGAAGCAAAGATTCAACCAACTCTGTAATCGCAGGAACCTACGGCTATTTGGCCCCCGAATACGCATACTCATCGAAGGCAACAACAAAGTGCGATGTGTACAGTTTCGGAGTGGTGTTAATGGAGCTGATTACAGGGAAGAAGCCGATCGAAGCCGAATATGGCGAGAATAAGAACATTGTGTTCTGGGTTTCGAACAAAGTGGACACAAAAGAAAGGGTTCTTGAGATTGTTGACAAAAGATTAAAAGGGTTGTTCAGAGATGAGATAATTAAGGCTCTGAGGATCGCAATTCGCTGTACTTACAAGAATCCAGTGCTTCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTCGATCGACCCTTCGAAGATGTCAAAAAAGGAGAAGATACCGTATGA 2805 45.03 MAFHSAFFLLLFLTSSISSSQAFTATNQSQFFFLMQKTASGKFLSDWDFSGGKSFCNFTGIECNDRGHVVGIDISGQPLSGGFPEDVCSYLPELRVLRLAGTGFRGRFPLGITNCSLLEELDMSSLYLNGTIPDFSQMKQLRVLDLSYNSFTSDFPMSVFDLVNLEVLNFNENYNLNLWKLPVNISSLKKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPKEISLLKNLQQLELYYNELTGNIPEELGNLTELVDVDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVLDLSENHLSGPLPSDICRGGKLLYFLVLQNRLSGEIPASFAECESLLRFRISSNQLVGTIPEGVLALPHVSIIDVAHNNLIGSISNSISQARNLSELFLQRNRISGVIPPEISEATNLVKLDLSYNLLSGPVPSEIGNLKKLNLVMLQGNQLDSSIPSSFMSLKSLNVLDLSNNRLSGKIPESLSELFPSSLNFSNNQLSGPIPLSLIKQGLADSFSGNPNLCVPPAYFISPDQKFPICSHSSFTKRLNFIWAIGIPLLIFITGAVLFLKRRITTRKTSEIANEETLSSSFFHLQNFDQDSILEAMVEKNIVGHGGSGTVYKIELGKGEIVAVKRLWNRRAKHLFDKELKTEVETLGTIRHKNIVKLYSYFSGLKCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHRIAVGIAQGLAYLHHDLSPPVMHRDIKTTNILLDANYQPKVADFGIAKVLQGSKDSTNSVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPIEAEYGENKNIVFWVSNKVDTKERVLEIVDKRLKGLFRDEIIKALRIAIRCTYKNPVLRPAMGEVVQLLQEVDPCKFDRPFEDVKKGEDTV 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32970137 32973854 - Maker00033982 Lcy13g1447 651752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1447 934 ProSiteProfiles Leucine-rich repeat profile. 502 524 IPR001611 GO:0005515(InterPro)
Lcy13g1447 934 FunFam receptor protein-tyrosine kinase CEPR1 626 720 - -
Lcy13g1447 934 Gene3D Transferase(Phosphotransferase) domain 1 721 924 - -
Lcy13g1447 934 SUPERFAMILY L domain-like 253 575 - -
Lcy13g1447 934 PRINTS Leucine-rich repeat signature 455 468 - -
Lcy13g1447 934 PRINTS Leucine-rich repeat signature 500 513 - -
Lcy13g1447 934 FunFam Leucine-rich repeat receptor-like protein kinase 178 280 - -
Lcy13g1447 934 Pfam Leucine Rich Repeat 502 524 IPR001611 GO:0005515(InterPro)
Lcy13g1447 934 Pfam Leucine Rich Repeat 286 307 IPR001611 GO:0005515(InterPro)
Lcy13g1447 934 Pfam Leucine Rich Repeat 140 159 IPR001611 GO:0005515(InterPro)
Lcy13g1447 934 Pfam Leucine Rich Repeat 238 260 IPR001611 GO:0005515(InterPro)
Lcy13g1447 934 Pfam Leucine Rich Repeat 337 354 IPR001611 GO:0005515(InterPro)
Lcy13g1447 934 Pfam Leucine Rich Repeat 430 450 IPR001611 GO:0005515(InterPro)
Lcy13g1447 934 Pfam Leucine Rich Repeat 454 476 IPR001611 GO:0005515(InterPro)
Lcy13g1447 934 SUPERFAMILY RNI-like 70 347 - -
Lcy13g1447 934 Pfam Protein kinase domain 645 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1447 934 Gene3D Phosphorylase Kinase; domain 1 615 720 - -
Lcy13g1447 934 PANTHER LEUCINE RICH REPEAT KINASE 2 181 914 IPR051420 -
Lcy13g1447 934 Gene3D Ribonuclease Inhibitor 33 176 IPR032675 -
Lcy13g1447 934 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1447 934 ProSiteProfiles Protein kinase domain profile. 643 925 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1447 934 SMART serkin_6 643 919 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1447 934 FunFam Receptor protein-tyrosine kinase CEPR1 284 570 - -
Lcy13g1447 934 SUPERFAMILY Protein kinase-like (PK-like) 625 912 IPR011009 -
Lcy13g1447 934 SMART LRR_typ_2 236 260 IPR003591 -
Lcy13g1447 934 SMART LRR_typ_2 500 524 IPR003591 -
Lcy13g1447 934 SMART LRR_typ_2 476 499 IPR003591 -
Lcy13g1447 934 SMART LRR_typ_2 284 308 IPR003591 -
Lcy13g1447 934 SMART LRR_typ_2 429 452 IPR003591 -
Lcy13g1447 934 SMART LRR_typ_2 138 162 IPR003591 -
Lcy13g1447 934 Gene3D Ribonuclease Inhibitor 177 280 IPR032675 -
Lcy13g1447 934 FunFam leucine-rich repeat receptor-like protein kinase TDR 721 922 - -
Lcy13g1447 934 Gene3D Ribonuclease Inhibitor 292 570 IPR032675 -
Lcy13g1447 934 ProSitePatterns Protein kinases ATP-binding region signature. 649 671 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1447 Lcy-Chr13:32970137 Lcy9g1649 Lcy-Chr9:41629593 2.01E-223 dispersed
Lcy6g0277 Lcy-Chr6:2428567 Lcy13g1447 Lcy-Chr13:32970137 6.68E-54 dispersed
Lcy10g1630 Lcy-Chr10:40710733 Lcy13g1447 Lcy-Chr13:32970137 4.04E-81 transposed
Lcy1g0870 Lcy-Chr1:7482960 Lcy13g1447 Lcy-Chr13:32970137 1.01E-73 wgd
Lcy13g1447 Lcy-Chr13:32970137 Lcy9g0919 Lcy-Chr9:31005023 3.69E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65578 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1447 - - - 0.0