Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1450 ATGGTGATGCCCGAGTCTTCTGAGGGCCACCGGACCGCGTCTCGTCGGGCGAATCGACCGCCGAATCGACCGCTTGTCGGAGCTAGGGTTCCGCTAAAGCGGTTACTCCGCGTCGCATCTGTCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTTACTCCTTATATTCAAGAGCTCGGTATTCCTCATGCTTGGTCTAGTCTCATATGGCTCTGCGGACCGCTTTCCGGCCTCTTTGTGCAGCCGCTCGTTGGCCACATGAGCGATCGCTGCGCCAGCCGATACGGCCGCCGGAGGCCGTTCATCGTCGCTGGAGCGCTTTCCATAGTGCTCGCCGTTTTGATTATCGGTCACTCGGCGGACCTCGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGTTTGGATTTTGGATTCTGGACGTCGCTAACAACTTCTCACAGGGTCCTTGTAGAGCTCTGCTCGCTGATCTTACCGGTAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATCGCTATTGGTAATGTTTTTGGATATGCGACTGGATCTTTTAGTGGCTGGTACAAGATCTTGCCGTTTACTCGTACCTCTGCATGTTCTGTGAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATCGTGTTCATTGCAATTACAACATATTTGAGTGTCTCAGCAGCTCAAGAGTTACCTCTAGATTCAAACGACAGGTTGTCCCTGGTTGTGGAAGAAGGTATGGGGCAGTCAAGTCATGCTTCAGAAGCATTCCTCTGGGAGTTGTTTCGGACTTTTAGAAATTTCTCCGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGGTAGCATGGTTTCCATTTATTCTATTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCGAACGAAGGACAGAGCTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTTTAATTCTGTTGTCCTTGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTTGTATGGGGAATCTCTAATATTTTTATGGCTCTATGTTTCCTTACTATCCTGGTTGTCACGTATGTGGCAAACAATATGGGCTATATAGGTCATGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCGCGTGTTGAATCTTTACAACTTGGTCAAGGTGGGTTTGTCTGCGGGTGTCTTGAACTTAGCAATAGTAATCCCACAGAACAGAAGAGCAAGGTGGGGTTGGGTGCTTTGTTGAGAGACAGTAATTGTGTGAGACATTCTGAAGTCTCAAGCTTGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCATTGCCATCTTGGCTCTTCCTCGGTCTAGCGCTCAGAAGCCCAGAACCCTCACATGAGGTATTCAAATATTTGAAAAGCTTGGTGGTGTGCATCTCATCCATGATCAACATGATAACTGATCTAAATTTTGATGCAAAGCGCATGTGTAACATACAATACTGGGGAAGCCTGAGCTGTGGATTCCAAAATTACTCTGAAGACTACTTTCTTACCAACGAAGATAATGCTGCTGATTGGGAATTATTCCTTATGAAGTATGATGAGAAGTATCAGTTGAGGGTTCTGTTGTTTGATACTTACCTTTCACCTACATCAACTAGAGCCAAAGACACATGGGATCTGACATGGGGTTGTGTTATGAGTTTCAGAGAAGTAATATCTTATACAGAGGAAACAAAGGAAAAACTGGTCCTTGTGCAGCTGCTGCTCAGAAGGGAGGATAAACAATCCAAAGTTGCTGCCTGTGGGTGGGTGGCTTATGATGGTAGGGCTCTGTGCCTCAGCTAA 2055 46.28 MVMPESSEGHRTASRRANRPPNRPLVGARVPLKRLLRVASVACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDRCASRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVFGFWILDVANNFSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYATGSFSGWYKILPFTRTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQELPLDSNDRLSLVVEEGMGQSSHASEAFLWELFRTFRNFSGYIWVILLVTSLTWVAWFPFILFDTDWMGREIYGGKPNEGQSYSSGVRMGAFGLMFNSVVLGITSLLMEKLCRKWGAGFVWGISNIFMALCFLTILVVTYVANNMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGGFVCGCLELSNSNPTEQKSKVGLGALLRDSNCVRHSEVSSLLWCPWEVDHGISCLVVETLQLLLWQHLQPLQVDSLPSWLFLGLALRSPEPSHEVFKYLKSLVVCISSMINMITDLNFDAKRMCNIQYWGSLSCGFQNYSEDYFLTNEDNAADWELFLMKYDEKYQLRVLLFDTYLSPTSTRAKDTWDLTWGCVMSFREVISYTEETKEKLVLVQLLLRREDKQSKVAACGWVAYDGRALCLS 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33002247 33010693 + Maker00034145 Lcy13g1450 651755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1450 684 Pfam MFS/sugar transport protein 47 181 - -
Lcy13g1450 684 NCBIfam sucrose/proton symporter 30 451 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Lcy13g1450 684 SUPERFAMILY MFS general substrate transporter 35 435 IPR036259 -
Lcy13g1450 684 PANTHER SUGAR TRANSPORTER 29 451 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Lcy13g1450 684 Gene3D MFS general substrate transporter like domains 32 449 IPR036259 -
Lcy13g1450 684 MobiDBLite consensus disorder prediction 1 25 - -
Lcy13g1450 684 CDD MFS_SLC45_SUC 35 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1450 Lcy-Chr13:33002247 Lcy4g1200 Lcy-Chr4:26072899 2.27E-126 dispersed
Lcy13g1450 Lcy-Chr13:33002247 Lcy4g1195 Lcy-Chr4:25885630 2.27E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1450 K15378 - csv:101220384 806.594