Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1450 ATGGTGATGCCCGAGTCTTCTGAGGGCCACCGGACCGCGTCTCGTCGGGCGAATCGACCGCCGAATCGACCGCTTGTCGGAGCTAGGGTTCCGCTAAAGCGGTTACTCCGCGTCGCATCTGTCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTTACTCCTTATATTCAAGAGCTCGGTATTCCTCATGCTTGGTCTAGTCTCATATGGCTCTGCGGACCGCTTTCCGGCCTCTTTGTGCAGCCGCTCGTTGGCCACATGAGCGATCGCTGCGCCAGCCGATACGGCCGCCGGAGGCCGTTCATCGTCGCTGGAGCGCTTTCCATAGTGCTCGCCGTTTTGATTATCGGTCACTCGGCGGACCTCGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGTTTGGATTTTGGATTCTGGACGTCGCTAACAACTTCTCACAGGGTCCTTGTAGAGCTCTGCTCGCTGATCTTACCGGTAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATCGCTATTGGTAATGTTTTTGGATATGCGACTGGATCTTTTAGTGGCTGGTACAAGATCTTGCCGTTTACTCGTACCTCTGCATGTTCTGTGAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATCGTGTTCATTGCAATTACAACATATTTGAGTGTCTCAGCAGCTCAAGAGTTACCTCTAGATTCAAACGACAGGTTGTCCCTGGTTGTGGAAGAAGGTATGGGGCAGTCAAGTCATGCTTCAGAAGCATTCCTCTGGGAGTTGTTTCGGACTTTTAGAAATTTCTCCGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGGTAGCATGGTTTCCATTTATTCTATTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCGAACGAAGGACAGAGCTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTTTAATTCTGTTGTCCTTGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTTGTATGGGGAATCTCTAATATTTTTATGGCTCTATGTTTCCTTACTATCCTGGTTGTCACGTATGTGGCAAACAATATGGGCTATATAGGTCATGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCGCGTGTTGAATCTTTACAACTTGGTCAAGGTGGGTTTGTCTGCGGGTGTCTTGAACTTAGCAATAGTAATCCCACAGAACAGAAGAGCAAGGTGGGGTTGGGTGCTTTGTTGAGAGACAGTAATTGTGTGAGACATTCTGAAGTCTCAAGCTTGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCATTGCCATCTTGGCTCTTCCTCGGTCTAGCGCTCAGAAGCCCAGAACCCTCACATGAGGTATTCAAATATTTGAAAAGCTTGGTGGTGTGCATCTCATCCATGATCAACATGATAACTGATCTAAATTTTGATGCAAAGCGCATGTGTAACATACAATACTGGGGAAGCCTGAGCTGTGGATTCCAAAATTACTCTGAAGACTACTTTCTTACCAACGAAGATAATGCTGCTGATTGGGAATTATTCCTTATGAAGTATGATGAGAAGTATCAGTTGAGGGTTCTGTTGTTTGATACTTACCTTTCACCTACATCAACTAGAGCCAAAGACACATGGGATCTGACATGGGGTTGTGTTATGAGTTTCAGAGAAGTAATATCTTATACAGAGGAAACAAAGGAAAAACTGGTCCTTGTGCAGCTGCTGCTCAGAAGGGAGGATAAACAATCCAAAGTTGCTGCCTGTGGGTGGGTGGCTTATGATGGTAGGGCTCTGTGCCTCAGCTAA 2055 46.28 MVMPESSEGHRTASRRANRPPNRPLVGARVPLKRLLRVASVACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDRCASRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVFGFWILDVANNFSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYATGSFSGWYKILPFTRTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQELPLDSNDRLSLVVEEGMGQSSHASEAFLWELFRTFRNFSGYIWVILLVTSLTWVAWFPFILFDTDWMGREIYGGKPNEGQSYSSGVRMGAFGLMFNSVVLGITSLLMEKLCRKWGAGFVWGISNIFMALCFLTILVVTYVANNMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGGFVCGCLELSNSNPTEQKSKVGLGALLRDSNCVRHSEVSSLLWCPWEVDHGISCLVVETLQLLLWQHLQPLQVDSLPSWLFLGLALRSPEPSHEVFKYLKSLVVCISSMINMITDLNFDAKRMCNIQYWGSLSCGFQNYSEDYFLTNEDNAADWELFLMKYDEKYQLRVLLFDTYLSPTSTRAKDTWDLTWGCVMSFREVISYTEETKEKLVLVQLLLRREDKQSKVAACGWVAYDGRALCLS 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33002247 33010693 + Maker00034145 Lcy13g1450 651755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1450 684 Pfam MFS/sugar transport protein 47 181 - -
Lcy13g1450 684 NCBIfam sucrose/proton symporter 30 451 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Lcy13g1450 684 SUPERFAMILY MFS general substrate transporter 35 435 IPR036259 -
Lcy13g1450 684 PANTHER SUGAR TRANSPORTER 29 451 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Lcy13g1450 684 Gene3D MFS general substrate transporter like domains 32 449 IPR036259 -
Lcy13g1450 684 MobiDBLite consensus disorder prediction 1 25 - -
Lcy13g1450 684 CDD MFS_SLC45_SUC 35 444 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1450 K15378 - - csv:101220384 806.594
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1450 Lcy-Chr13:33002247 Lcy4g1200 Lcy-Chr4:26072899 2.27E-126 dispersed
Lcy13g1450 Lcy-Chr13:33002247 Lcy4g1195 Lcy-Chr4:25885630 2.27E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g1200 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy4g1195 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy4g1200 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1195 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1200 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy4g1195 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy13g1150 . 223 664 Sucrose Transporter Gene Family AT2G02860 71.7 2.9e-182 635.6
Lcy4g1200 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1
Lcy4g1195 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1
Lcy4g1200 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy4g1195 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy13g1450 . 18 441 Sucrose Transporter Gene Family AT1G09960 67.4 7.9e-165 577.8
Lcy4g1200 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1195 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1200 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1195 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1200 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1195 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1200 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1195 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1200 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy4g1195 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy13g1150 . 223 664 Sucrose Transporter Gene Family AT2G02860 71.7 2.9e-182 635.6
Lcy13g1450 . 18 441 Sucrose Transporter Gene Family AT1G09960 67.4 7.9e-165 577.8
Lcy4g1200 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1195 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1200 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1195 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1200 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy4g1195 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy4g1200 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy4g1195 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy4g1200 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1195 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1200 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1
Lcy4g1195 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1