Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1451 ATGTGTAACTCAAAACCATCCTCTCCTAATGATTCCTCATTTCTTCCTCCTAACTACAAAAGCAACTTCATGAACAATCCCAACAAAAACTTGGACAATAATAATCATAATAACAACAATCTTCTCAAACCTGCTGATGATCAACTGGCTCAACTTCATAGATTCCCCACTGTTTCTGAGGCAGTGGAAGAAGTGAAGGAATTAGGGAAGATTTCAGGTCCAACAGCCATAACTGGCCTGCTTTTGTACTCAAGAGCTATGATCTCCATGCTTTTTCTTGGTTACCTTGGAGAGCTTGAACTTGCTGGTGGTTCTCTCTCTATTGGCTTTGCCAACATCACTGGCTACTCTGTTCTCTCTGGTTTGGCCATGGGAATGGAGCCCATTTGTGGCCAAGCTTATGGAGCTAAACAATGGAAACTCCTTGGCATAACCCTTCAAAGAACTGTCCTTCTTCTTCTCACTTCCTCTGTTCCCATCTCCTTCATGTGGCTCAACATGAAAAGAATCCTCTTGTGGTGTGGCCAAGATGAAGAAATCTCTTCCATGGCTCAAACTTTCATCCTCTTCTCCATTCCTGACCTGATCTTCCTCTCCCTTCTTCACCCACTTCGAATTTACTTGAGAACTCAAAGCATTACTCTGCCATTGACCTACTGCTCTGCTCTCTCTGTTCTTCTTCACATTCCCCTGAATTTCCTCTTGGTCGTGCATTTCAAAATGGGCATTTCTGGAGTCGCCATTGCCATGGTCTGGTTCAATTTGAACGTCTTCTTGTTCCTCGTTTCTTTCGTTTACTTCTCTCGAGTGTACAAAGATTCTTGGGTTTCTCCATCTGTGGATTGCCTCCATGGATGGACTCCTCTGCTTTCCCTTGCAATTCCCACTTGCGTCTCTGTTTGCCTCGAATGGTGGTGGTACGAATTCATGATAATGCTCTGTGGGCTTCTCGTAAACCCCAAAGCCACCATCGCTTCCATGGGGATTTTGATTCAAACCACTTCTTTGGTTTACGTTTTCCCTTCCTCTCTCAGCCTCGGAGTTTCCACCAGAGTCGGCAACGAATTGGGCGCAAATCGGCCCGCCAAAGCTCGCATTTCGATGATTGTCTCACTCGTCTGCGCCGCCGCGCTCGGCGTGGCGGCCATGGTCTTCACGACTCTGATGAGGCACAAATGGGGCAGATTCTTCACCGACGACGCGGAAATTCTCGAACTGACGGCGGTGGCATTGCCGATTGTGGGACTCTGTGAGCTCGGAAACTGCCCACAGACGACCGGGTGCGGCGTTCTGAGAGGCAGCGCTCGGCCGACGATCGGAGCAAACATCAATCTGGGTTCGTTTTATTTGGTGGGTTTTCCGGTGGCGATCGTGATGGGGTTCGTGGTGAAATTGGGATTTGCAGGGCTGTGGATTGGGTTGCTTGCGGCTCAAGGTTCTTGTGCTCTGATGATGATTTATGTTCTTTGTACAACGGATTGGATGGCTCAAGTCGAAAGAGCGATGCAGCTTACAAAGGGCTCTTCCAATTGCAATAATCCGCCATTGTTGCCAATTTCAAGCTCTTCTTGTTCAGAAGATGATGATTCAGATGTCAAAAAAATGGCGAATTTGGATGAGATTTTCTGCACTAATCATGAAACTCATCCTCTCATACCCACTGCTCCTACTACAACAAACACTACTGTTCATTAA 1695 46.96 MCNSKPSSPNDSSFLPPNYKSNFMNNPNKNLDNNNHNNNNLLKPADDQLAQLHRFPTVSEAVEEVKELGKISGPTAITGLLLYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLTSSVPISFMWLNMKRILLWCGQDEEISSMAQTFILFSIPDLIFLSLLHPLRIYLRTQSITLPLTYCSALSVLLHIPLNFLLVVHFKMGISGVAIAMVWFNLNVFLFLVSFVYFSRVYKDSWVSPSVDCLHGWTPLLSLAIPTCVSVCLEWWWYEFMIMLCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPAKARISMIVSLVCAAALGVAAMVFTTLMRHKWGRFFTDDAEILELTAVALPIVGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGFPVAIVMGFVVKLGFAGLWIGLLAAQGSCALMMIYVLCTTDWMAQVERAMQLTKGSSNCNNPPLLPISSSSCSEDDDSDVKKMANLDEIFCTNHETHPLIPTAPTTTNTTVH 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33012196 33014478 + Maker00033920 Lcy13g1451 651756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1451 564 CDD MATE_eukaryotic 64 500 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Lcy13g1451 564 PANTHER MULTIDRUG RESISTANCE PROTEIN 59 497 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Lcy13g1451 564 Pfam MatE 74 234 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Lcy13g1451 564 Pfam MatE 295 457 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Lcy13g1451 564 MobiDBLite consensus disorder prediction 1 43 - -
Lcy13g1451 564 NCBIfam MATE family efflux transporter 80 471 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1451 K03327 - - csv:101207119 921.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0748 Lcy-Chr12:9529636 Lcy13g1451 Lcy-Chr13:33012196 1.10E-138 dispersed
Lcy12g1700 Lcy-Chr12:37491609 Lcy13g1451 Lcy-Chr13:33012196 3.40E-205 dispersed
Lcy12g1746 Lcy-Chr12:38239466 Lcy13g1451 Lcy-Chr13:33012196 5.51E-86 dispersed
Lcy13g1451 Lcy-Chr13:33012196 Lcy6g0192 Lcy-Chr6:1744495 5.69E-191 dispersed
Lcy5g0044 Lcy-Chr5:594063 Lcy13g1451 Lcy-Chr13:33012196 5.24E-160 transposed
Lcy1g0818 Lcy-Chr1:6957172 Lcy13g1451 Lcy-Chr13:33012196 5.10E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g574 . . . . . . . . Cmo05g00594 Cmo12g00181 . . . Car12g00207 Sed01g1237 . . Bhi04g00898 Tan02g2514 Cmetu03g1714 . Hepe10g0400 . Lcy13g1451 Cla08g01188 Cam08g1653 Cec08g1229 Cco08g1348 Clacu08g1349 . Cre08g1135 . . Cone17ag1153 Cone20ag0575 . . . Cme03g01775 Blo17g00082 Blo18g00092 . Bda13g01343 Bpe02g01171 Bpe14g00502 Bma01g01360 Bma02g00097 . . . Cma12g00226 Cma05g00568 Car05g00512 . Cpe11g00497 . . . . . . . . . . . . . . . Lsi08g01051 Csa02g02235 Chy03g01282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006622 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 38