Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1454 ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTGATGGCTCTACGAAGGGAAGCAAATTGGGACGCCATTCCAACTGAAATCAGCGATCTCTGCTCAAATTGGGCATTCGATTACTGTTTCGAACAAAACACTGCCAATTTCCACCCAAATTCTTCATCGGAACCTCTCTCCGCGCAGAATCTCGATGAGTTTTACCATCCTTTGGCAAACGAGTTCTCAGTTCCACAAATGGCCGATTCCGCCTACGCCGCCATGGAAGTAGCCGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGTGGAGCGAGAAGGAGATGGAGAGGAAGAGGAATTAGGTTTTCTCGCGGATGAGATTCAGAACATGGAGGCGGTTCAAGCTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGAACTCTCCGTTTTCAACATCGGAACATGCTCTCTCGAACGAAAGAACAGACCGAAGAAATTGCAGGGCCAACCGTCGAAGAATCTCATGGCTGAAAGAAGGAGAAGGAAGCGCTTGAACGATCGCCTCTCAATGCTCAGATCCATCGTCCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTGGCAGATGCAATCGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGAGAAGTGGATCGATCGAATCAGACGACGACGAACTCATTCAACGACACAAAACCGAGCGAATTCGTAGTGAGGAATTCACCAAAATTTGAGGTGGAAAGCAGAAACGGGAACACGAGGATCGAGATTTGCTGTGCGACAAAGCCAGGATTGCTATTATCGACAGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCCACTTGTTCTGAGGAGCTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGATATGGAGGAAGCTGCTTGTAG 999 47.65 MELDEHVFLEELMALRREANWDAIPTEISDLCSNWAFDYCFEQNTANFHPNSSSEPLSAQNLDEFYHPLANEFSVPQMADSAYAAMEVAAPLPFQAERPNVEREGDGEEEELGFLADEIQNMEAVQAQSACKMEPNQSPELSVFNIGTCSLERKNRPKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQREVDRSNQTTTNSFNDTKPSEFVVRNSPKFEVESRNGNTRIEICCATKPGLLLSTVNTIEALGLEIQQCVISCFNDFALQATCSEELKQRTELKPEELKEALFRNAGYGGSCL 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33099195 33102169 - Maker00034029 Lcy13g1454 651759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1454 332 Pfam Helix-loop-helix DNA-binding domain 169 211 IPR011598 GO:0046983(InterPro)
Lcy13g1454 332 Gene3D - 153 228 IPR036638 GO:0046983(InterPro)
Lcy13g1454 332 SMART finulus 168 217 IPR011598 GO:0046983(InterPro)
Lcy13g1454 332 Coils Coil 201 228 - -
Lcy13g1454 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983(InterPro)
Lcy13g1454 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 128 327 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy13g1454 332 Pfam Plant bHLH transcription factor, ACT-like domain 251 321 IPR054502 -
Lcy13g1454 332 CDD ACT_UUR-ACR-like 258 299 - -
Lcy13g1454 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 227 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1454 Lcy-Chr13:33099195 Lcy9g1656 Lcy-Chr9:41746891 3.16E-95 dispersed
Lcy10g0049 Lcy-Chr10:714595 Lcy13g1454 Lcy-Chr13:33099195 4.91E-36 transposed
Lcy5g2093 Lcy-Chr5:43991297 Lcy13g1454 Lcy-Chr13:33099195 4.68E-40 transposed
Lcy1g0855 Lcy-Chr1:7309351 Lcy13g1454 Lcy-Chr13:33099195 6.83E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19394 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1454 - - - 0.0