Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g1454 | ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTGATGGCTCTACGAAGGGAAGCAAATTGGGACGCCATTCCAACTGAAATCAGCGATCTCTGCTCAAATTGGGCATTCGATTACTGTTTCGAACAAAACACTGCCAATTTCCACCCAAATTCTTCATCGGAACCTCTCTCCGCGCAGAATCTCGATGAGTTTTACCATCCTTTGGCAAACGAGTTCTCAGTTCCACAAATGGCCGATTCCGCCTACGCCGCCATGGAAGTAGCCGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGTGGAGCGAGAAGGAGATGGAGAGGAAGAGGAATTAGGTTTTCTCGCGGATGAGATTCAGAACATGGAGGCGGTTCAAGCTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGAACTCTCCGTTTTCAACATCGGAACATGCTCTCTCGAACGAAAGAACAGACCGAAGAAATTGCAGGGCCAACCGTCGAAGAATCTCATGGCTGAAAGAAGGAGAAGGAAGCGCTTGAACGATCGCCTCTCAATGCTCAGATCCATCGTCCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTGGCAGATGCAATCGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGAGAAGTGGATCGATCGAATCAGACGACGACGAACTCATTCAACGACACAAAACCGAGCGAATTCGTAGTGAGGAATTCACCAAAATTTGAGGTGGAAAGCAGAAACGGGAACACGAGGATCGAGATTTGCTGTGCGACAAAGCCAGGATTGCTATTATCGACAGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCCACTTGTTCTGAGGAGCTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGATATGGAGGAAGCTGCTTGTAG | 999 | 47.65 | MELDEHVFLEELMALRREANWDAIPTEISDLCSNWAFDYCFEQNTANFHPNSSSEPLSAQNLDEFYHPLANEFSVPQMADSAYAAMEVAAPLPFQAERPNVEREGDGEEEELGFLADEIQNMEAVQAQSACKMEPNQSPELSVFNIGTCSLERKNRPKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQREVDRSNQTTTNSFNDTKPSEFVVRNSPKFEVESRNGNTRIEICCATKPGLLLSTVNTIEALGLEIQQCVISCFNDFALQATCSEELKQRTELKPEELKEALFRNAGYGGSCL | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 33099195 | 33102169 | - | Maker00034029 | Lcy13g1454 | 651759 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g1454 | 332 | Pfam | Helix-loop-helix DNA-binding domain | 169 | 211 | IPR011598 | GO:0046983(InterPro) | |
Lcy13g1454 | 332 | Gene3D | - | 153 | 228 | IPR036638 | GO:0046983(InterPro) | |
Lcy13g1454 | 332 | SMART | finulus | 168 | 217 | IPR011598 | GO:0046983(InterPro) | |
Lcy13g1454 | 332 | Coils | Coil | 201 | 228 | - | - | |
Lcy13g1454 | 332 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 162 | 211 | IPR011598 | GO:0046983(InterPro) | |
Lcy13g1454 | 332 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 128 | 327 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Lcy13g1454 | 332 | Pfam | Plant bHLH transcription factor, ACT-like domain | 251 | 321 | IPR054502 | - | |
Lcy13g1454 | 332 | CDD | ACT_UUR-ACR-like | 258 | 299 | - | - | |
Lcy13g1454 | 332 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 166 | 227 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1454 | Lcy-Chr13:33099195 | Lcy9g1656 | Lcy-Chr9:41746891 | 3.16E-95 | dispersed | |
Lcy10g0049 | Lcy-Chr10:714595 | Lcy13g1454 | Lcy-Chr13:33099195 | 4.91E-36 | transposed | |
Lcy5g2093 | Lcy-Chr5:43991297 | Lcy13g1454 | Lcy-Chr13:33099195 | 4.68E-40 | transposed | |
Lcy1g0855 | Lcy-Chr1:7309351 | Lcy13g1454 | Lcy-Chr13:33099195 | 6.83E-86 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19394 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g1454 | - | - | - | 0.0 |