Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1456 AGATCCCTACGTAATCGTTATGCAGCGAAATATGTTACAAAAAGGAATATGGCATCTTCAATATTAGTGGGGAGACATCATCATAGAGATAGATATGGAAGAAATGGGAAGTGGAAAAGTGGGGCTTTCCCTTCTGGCTTGCTGCTTTCCGAGAGCTTCTGCAAGAGACGGAGTGCAAATGCTGAGATCGAGTTCTGGAGATTAGGATTTTTGCTGCCGGAGCGGAGCAGATTGACGGCGGAGATGGTGGTTAGAAAAGTCGGCAAATATGAGGTCGGGAGGACGATTGGAGAAGGTACTTTTGCAAAGGTAAAGTTCGCTCAGAACACTGAGACTGGCGAGAGTGTTGCTATGAAAGTCCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGACCAGGTTCATCATGGACGCCTTAGTGAAGCTGAATCTAGGAAATACTTCCAACAGCTAATTGATGGCGTAGATTATTGCCACAGCAAGGGAGTATTTCACAGAGATTTAAAGCAGCCTGAAAATCTGCTACTCGACTCCCTAGGTAATTTGAAGATCTCAGACTTTGGCCTGAGTGCATTGCCCGAACAAGTAAGACATATTTTAATGGTTCTTATTTACTCAGATATAGACACTTCTTGTGTGCTCAATCACAAGGGTTATAATGGTGCTATGGCAGATGTTTGGTCCTGTGGGATTGAGAGAGCCGACTTTTCATGTCCATCTTGGTTCCCTGTGGGGGCAAAATCCTTGATTCATAGAATATTTGACCCCAATCCTTCAACTCGTATTACCATTGAACAAATCAGAGAGGATGAGTGGTTCAAGAAAAATTATGTTTCTGTCAAACTTTTCGAAGATGAAGATGTAAATCTGGATGATGTGAATGCTGTCTTTGATGATCCTGAGGAACACAGGACCGAAGAAGAACGTGGTAATGAGGACATGAGCCCTTTGGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTAAACCTGGGAACGATGTTCGACCGTGGCCAGGATTCTATGAAGTACCCGACACGCTTCGTCTGCCAAAAGCCTGCAAAGGTTTTATTATCAACTATGGAAGTTGTAGCTCAATCAATGGGTTTTAAGACACACATTCGCAATTACAAGATGAGAGTAGAAGGCCCATCAGCAACCAAGACTTCTTATTTCTCAGTCATTATGGAAATTTTCGAAGTTGCTCCCACGTTCTTTATGGTTGACATTCAGAAAGCAGCTGGGGAAACCAGCGAGTACCTCAAGTTCTACAAGAACTTTTATAGCAATCTTGAAGACATCATCTGGAAACCTTCAATTGACACCAGCAAATCGAGGATCGCCAAGAACAAGAGTAAAAAACGTTGA 1377 42.85 RSLRNRYAAKYVTKRNMASSILVGRHHHRDRYGRNGKWKSGAFPSGLLLSESFCKRRSANAEIEFWRLGFLLPERSRLTAEMVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQVHHGRLSEAESRKYFQQLIDGVDYCHSKGVFHRDLKQPENLLLDSLGNLKISDFGLSALPEQVRHILMVLIYSDIDTSCVLNHKGYNGAMADVWSCGIERADFSCPSWFPVGAKSLIHRIFDPNPSTRITIEQIREDEWFKKNYVSVKLFEDEDVNLDDVNAVFDDPEEHRTEEERGNEDMSPLALNAFDLIILSQGLNLGTMFDRGQDSMKYPTRFVCQKPAKVLLSTMEVVAQSMGFKTHIRNYKMRVEGPSATKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKNFYSNLEDIIWKPSIDTSKSRIAKNKSKKR 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33131246 33141956 + Maker00033966 Lcy13g1456 651761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1456 458 Pfam NAF domain 317 375 IPR004041 GO:0007165(InterPro)
Lcy13g1456 458 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 85 135 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy13g1456 458 Gene3D Transferase(Phosphotransferase) domain 1 82 131 - -
Lcy13g1456 458 SUPERFAMILY Protein kinase-like (PK-like) 87 305 IPR011009 -
Lcy13g1456 458 FunFam Non-specific serine/threonine protein kinase 315 439 - -
Lcy13g1456 458 ProSitePatterns Protein kinases ATP-binding region signature. 96 128 IPR017441 GO:0005524(InterPro)
Lcy13g1456 458 Gene3D Transferase(Phosphotransferase) domain 1 132 316 - -
Lcy13g1456 458 Pfam Protein kinase domain 136 232 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1456 458 ProSiteProfiles Protein kinase domain profile. 1 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1456 458 CDD CIPK_C 321 436 - -
Lcy13g1456 458 Gene3D Kinase associated domain 1, KA1 317 440 - -
Lcy13g1456 458 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1456 Lcy-Chr13:33131246 Lcy2g0729 Lcy-Chr2:6426688 2.42E-125 dispersed
Lcy13g1456 Lcy-Chr13:33131246 Lcy5g1703 Lcy-Chr5:39519352 5.12E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65579 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1456 - - - 0.0