Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1457 ATGGCTTCCTTGCCTTCTGTTACTCTCACTGCCGCTCTCAGGCTCGAATCCGACGTACGAAAGCGACATTCCACCAGCTTTCTCGTCAACGATAAGAGTGCCGGCGTGCTGTATCAGAAAAATCAGTCGCTAATCCAACTGAATGTTGACGCGGAGTCGAAGTTTGTCGACTTGCGTGAAGCTCTGTCTCTGCTTAGAGAGGGTACGAGGATCGAAACTTCTTACTATATTCCTTTGTTGCAAGAATGCATAGATAGCAATTTAGCTGCAGAAGCGGAGATTATCCATGGACATATCGTAAAAACTGGGACTCATGAAGACTTATTCGTAACGACTTTTCTTGTTAATGTTTATGCGAAATGTGGAGTCATGGAAAATGCTCGCAAGGTGTTTGATAATTTGCCTAGAAGAAATGTCGTTGCATGGACAACTCTAGCGACTGGTTATGTCCAGAATTCGCAGCCTCTCGCTGCTCTTCGAGTATTCATCGAAATGTTGCAGGCTGGAGCTTATCCTACAAATTATACACTGGGAATAGTGTTGAATGCTTGTTCTTCCTTGCAATCTATCGAATTGGGGAAGCAAGTTCATGCGTATATCATCAAATATCACATAGATTTTGATACTAGTATTGGCAACTCTCTTTCTAGCTTCTACTCTAAGTTTGGGTGCTTGGAATTTGCAATAAGAGCCTTTCAGAAAATTAAGGAAAAGAATGTCATTTCATGGACTTCCGTTGTATCTGCCTGTGGCGATAATGGTCAAGCAGCTCGGAGTCTAAGTTTCTTCACCGAGATGCTCTCGGAAGGTGTGGAGCCGAACGAGTACACTCTGACCAGTGCCTTGAGCGCATGTTGTGTGATGCTGACATTGGGTCTAGGAGCACAGGTTCATTCACTAAGCATTAAGCTTGGTTATGGTTCAAGCATACCTATAAAAAATTCTGTCATGTACTTATACCTGAAATGTGGATGGCTTATTGAGGCTCAGAAATTGTTCGAAGGTATGGAGACCCTCAATTTGATTACATGGAATGCAATGATTGCAGGCCATGCGAAAATGATGGATCTTGCTGCAGATGATCTTGCAGCTCACAAGAGTGGATCTACAGCACTTAATATGTTCCAGAAATTACATCGCTCGGGCATGAAACCCGATCTGTTCACTTTCTCCAGTGTTTTAAGTGTGTGTAGTAGTCTAGTAGCCTTAGAACAAGGGGAACAAATTCATGCTCAGATCATCAAGAGTGGTGTTCTAGCAGATGTTGTTGTGGGAACTGCACTGGTCAGTATGTATAACAAATGTGGAAGTATTGATAAGGCGGGTAAAGCTTTCTTGGAGATGCCTTCAAGAACTTTGATATCATGGACTTCGATGATTACGGGATTTGCACGACACGGTTTGTCTCAACAAGCGCTTCAGCTCTTTGAAGACATGAGACTCGCAGGAATTAGACCAAACCAGGTTACTTTTGTAGGTGTTCTATCAGCTTGTAGCCATGCTGGGTTGGTGGATGAAGCACTCTATTACTTTGAAGTAATGCAAAAGCAATACAACATCAAGCCTGTAATGGACCATTTTGCATGCATGATTGACATGTATCTGAGGTTGGGTCAGGTGGAAGAAGCTTTTGATGTAGTCAAGAAGATGAATTTTGAGCCTAATGAAATTATATGGTCCATGTTAATTGCAGGATGTCGAAGTCATGGGAACAACGAATTGGGGTTTTACGCAGCCGAGCAGTTACTAAAACTCGGGCCAAAAGACACCGAGACCTATGTTGCCCTGCTAAATATGTACCTCTCTGCAGGGAGATGGAAGGATGTTTCCAAAGTGAGGAAATTAATGAAAGAAGAGAAGCTAGGAAAATTGAAGGATTGGAGCTGGATTAGCATCAAAGAAAAAGTTTACTCATTTAAACCCAATGACAAATCGCATTGTCAAAGTGCAGAGATGTACAATCTGTTGGAGACTGTACTCGACGAAGTAAAAAATCTCGGTTACGAGCCTGTTGAATATATGGAGGTAATCGAAGAGGAGGACGAGGAAAAAGTATTCTCCTCTACCATTTATCATAGTGAAAAGTTAGCTGTTGCCTTTGGTTTGTTAAACCTGCCAACAGCCATCCCGATTCGGGTTGTCAAGAGCATCACCATGTGTAGGGATTGCCATAATTTTATCAGATTCATTTCATTATTGAAAGGTAGGGAAATCGTCATCCGAGACAGCAAGCAGCTTCACAAGTTTTTGAACGGATACTGTTCTTGTGGAGGCTTCGGAGATCTTCTCTAA 2292 42.41 MASLPSVTLTAALRLESDVRKRHSTSFLVNDKSAGVLYQKNQSLIQLNVDAESKFVDLREALSLLREGTRIETSYYIPLLQECIDSNLAAEAEIIHGHIVKTGTHEDLFVTTFLVNVYAKCGVMENARKVFDNLPRRNVVAWTTLATGYVQNSQPLAALRVFIEMLQAGAYPTNYTLGIVLNACSSLQSIELGKQVHAYIIKYHIDFDTSIGNSLSSFYSKFGCLEFAIRAFQKIKEKNVISWTSVVSACGDNGQAARSLSFFTEMLSEGVEPNEYTLTSALSACCVMLTLGLGAQVHSLSIKLGYGSSIPIKNSVMYLYLKCGWLIEAQKLFEGMETLNLITWNAMIAGHAKMMDLAADDLAAHKSGSTALNMFQKLHRSGMKPDLFTFSSVLSVCSSLVALEQGEQIHAQIIKSGVLADVVVGTALVSMYNKCGSIDKAGKAFLEMPSRTLISWTSMITGFARHGLSQQALQLFEDMRLAGIRPNQVTFVGVLSACSHAGLVDEALYYFEVMQKQYNIKPVMDHFACMIDMYLRLGQVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNNELGFYAAEQLLKLGPKDTETYVALLNMYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWISIKEKVYSFKPNDKSHCQSAEMYNLLETVLDEVKNLGYEPVEYMEVIEEEDEEKVFSSTIYHSEKLAVAFGLLNLPTAIPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSCGGFGDLL 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33139150 33141708 - Maker00033926 Lcy13g1457 651762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1457 763 FunFam Pentatricopeptide repeat-containing protein 89 191 - -
Lcy13g1457 763 Pfam E motif 569 630 IPR046848 -
Lcy13g1457 763 PANTHER OS07G0578800 PROTEIN-RELATED 293 649 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Lcy13g1457 763 FunFam Pentatricopeptide repeat-containing protein At3g13880 194 292 - -
Lcy13g1457 763 NCBIfam pentatricopeptide repeat 241 275 IPR002885 -
Lcy13g1457 763 NCBIfam pentatricopeptide repeat 454 487 IPR002885 -
Lcy13g1457 763 NCBIfam pentatricopeptide repeat 527 550 IPR002885 -
Lcy13g1457 763 NCBIfam pentatricopeptide repeat 489 522 IPR002885 -
Lcy13g1457 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Lcy13g1457 763 Pfam PPR repeat family 453 499 IPR002885 -
Lcy13g1457 763 Pfam PPR repeat family 137 185 IPR002885 -
Lcy13g1457 763 Pfam PPR repeat family 238 286 IPR002885 -
Lcy13g1457 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Lcy13g1457 763 Gene3D Tetratricopeptide repeat domain 297 402 IPR011990 GO:0005515(InterPro)
Lcy13g1457 763 Gene3D Tetratricopeptide repeat domain 50 188 IPR011990 GO:0005515(InterPro)
Lcy13g1457 763 Gene3D Tetratricopeptide repeat domain 403 503 IPR011990 GO:0005515(InterPro)
Lcy13g1457 763 Gene3D Tetratricopeptide repeat domain 189 290 IPR011990 GO:0005515(InterPro)
Lcy13g1457 763 FunFam Pentatricopeptide repeat-containing protein At2g34400 410 660 - -
Lcy13g1457 763 SUPERFAMILY TPR-like 89 610 IPR011990 GO:0005515(InterPro)
Lcy13g1457 763 Pfam PPR repeat 426 451 IPR002885 -
Lcy13g1457 763 Pfam PPR repeat 314 339 IPR002885 -
Lcy13g1457 763 Pfam PPR repeat 529 550 IPR002885 -
Lcy13g1457 763 Pfam DYW family of nucleic acid deaminases 675 759 IPR032867 GO:0008270(InterPro)
Lcy13g1457 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Lcy13g1457 763 Gene3D Tetratricopeptide repeat domain 515 683 IPR011990 GO:0005515(InterPro)
Lcy13g1457 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1457 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1457 Lcy-Chr13:33139150 Lcy7g0746 Lcy-Chr7:7201731 1.49E-155 dispersed
Lcy13g1457 Lcy-Chr13:33139150 Lcy4g1471 Lcy-Chr4:36854376 2.59E-97 wgd
Lcy13g1457 Lcy-Chr13:33139150 Lcy9g0925 Lcy-Chr9:31197028 1.38E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g554 . . Bda01g00921 . . . . . . . . . . . . . . Bhi04g00908 . . . . . Lcy13g1457 Cla08g01181 . . . . . . . . Cone17ag1161 . . . . . . . . . Bpe02g01166 . Bma01g01366 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01042 Csa02g02228 Chy03g01289 .