Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1460 ATGGCCGTCGCCGTGCCGGATAATCTCTCTCGTGAGCAATATGTGTACCTTGCGAAGCTTGCTGAGCAGGCCGAGAGATACGAGGAGATGGTTCAGTTCATGCAGAAACTTGTTCTTGGTTCAACCCCAGGCTCCGAGCTCTCTGTCGAGGAACGAAATCTTCTCTCTGTCGCTTACAAGAACGTGATTGGCTCACTTCGAGCCGCTTGGCGGATTGTCTCTTCCATCGAGCAGAAGGAGGAGAGCCGTAAGAATGAAGAGCATGTTGTTCTTGTTAAGGATTATAGATCAAAGGTTGAGTCTGAGCTTTCCGAAGTCTGTGCGAGTATTTTGCAGCTTTTGGACTCGAATCTCATTCCCTCGGCCTCTGCTAGTGAGTCTAAGGTCTTCTACTTGAAGATGAAGGGGGATTACCATAGGTATTTGGCGGAGTTTAAGGTTGGGGATGAGAGGAAAGCTGCTGCTGAGGATACTATGCTGGCTTATAGGGCTGCTCAGATCTTCAATTGGATTATTCTGAATTCTGATTTTGCACTTGTTGGATTTTATGTTACGAAGGATGTTGCAGCTGCGGATCTTGCACCCACTCATCCGATAAGGCTGGGCCTGGCACTCAATTTCTCTGTGTTTTACTTCGAGATTCTGAATCAGTCCGATAAAGCATGTAGCATGGCCAAGGAGCCAGCTAATGACAGTACTATAAGTGCACTTACAATCATTATGCTTTCCCATCCTTCTTTTGTGTGTTTACTCACCAGTTCTTATGCTTCTGATCAGGCATTTGAGGAAGCCATTGCTGAGCTGGACACCTTGGGTGAAGAATCATACAAGGACAGTACCCTCATCATGCAACTGTTGAGGGACAACCTCACTCTCTGGACTTCAGATGCGCAGGACCAGTTAGATGAGTCATAG 915 46.99 MAVAVPDNLSREQYVYLAKLAEQAERYEEMVQFMQKLVLGSTPGSELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEEHVVLVKDYRSKVESELSEVCASILQLLDSNLIPSASASESKVFYLKMKGDYHRYLAEFKVGDERKAAAEDTMLAYRAAQIFNWIILNSDFALVGFYVTKDVAAADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEPANDSTISALTIIMLSHPSFVCLLTSSYASDQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQDQLDES 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33156297 33159476 - Maker00034170 Lcy13g1460 651765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1460 304 Pfam 14-3-3 protein 187 232 IPR023410 -
Lcy13g1460 304 Pfam 14-3-3 protein 258 294 IPR023410 -
Lcy13g1460 304 Pfam 14-3-3 protein 17 166 IPR023410 -
Lcy13g1460 304 Gene3D - 2 304 IPR036815 -
Lcy13g1460 304 PANTHER 14-3-3 PROTEIN 258 299 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Lcy13g1460 304 SMART 1433_4 11 303 IPR023410 -
Lcy13g1460 304 ProSitePatterns 14-3-3 proteins signature 2. 276 295 IPR023409 -
Lcy13g1460 304 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Lcy13g1460 304 PIRSF 14-3-3 174 246 IPR000308 -
Lcy13g1460 304 PIRSF 14-3-3 249 304 IPR000308 -
Lcy13g1460 304 PIRSF 14-3-3 7 173 IPR000308 -
Lcy13g1460 304 SUPERFAMILY 14-3-3 protein 258 299 IPR036815 -
Lcy13g1460 304 Coils Coil 17 37 - -
Lcy13g1460 304 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
Lcy13g1460 304 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Lcy13g1460 304 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
Lcy13g1460 304 SUPERFAMILY 14-3-3 protein 10 231 IPR036815 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1460 K06630 - - csv:101222827 450.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1460 Lcy-Chr13:33156297 Lcy3g0403 Lcy-Chr3:13416201 1.12E-114 dispersed
Lcy13g1460 Lcy-Chr13:33156297 Lcy13g1545 Lcy-Chr13:34264363 2.99E-114 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1545 . 4 242 14-3-3 family AT4G09000 90.4 1.6e-118 423.3
Lcy9g1719 . 5 242 14-3-3 family AT4G09000 90.3 3.5e-118 422.2
Lcy3g0403 . 6 241 14-3-3 family AT4G09000 86.4 4.8e-112 401.7
Lcy13g1460 . 10 298 14-3-3 family AT4G09000 61.2 1.5e-89 327.0
Lcy9g1731 . 5 236 14-3-3 family AT4G09000 71.8 1.4e-87 320.5
Lcy13g1561 . 5 246 14-3-3 family AT4G09000 67.2 4.1e-87 318.9
Lcy4g0704 . 4 285 14-3-3 family AT4G09000 60.2 4.6e-86 315.5
Lcy7g0331 . 4 204 14-3-3 family AT4G09000 62.2 3.2e-71 266.2
Lcy13g1545 . 6 262 14-3-3 family AT1G78300 89.9 4.5e-124 441.4
Lcy9g1719 . 5 258 14-3-3 family AT1G78300 89.4 5.0e-123 438.0
Lcy3g0403 . 6 253 14-3-3 family AT1G78300 87.5 3.1e-117 418.7
Lcy13g1460 . 11 299 14-3-3 family AT1G78300 62.3 2.9e-91 332.4
Lcy9g1731 . 1 248 14-3-3 family AT1G78300 69.2 4.7e-89 325.1
Lcy13g1561 . 1 252 14-3-3 family AT1G78300 66.5 1.0e-88 323.9
Lcy4g0704 . 7 302 14-3-3 family AT1G78300 59.1 2.6e-87 319.3
Lcy7g0331 . 8 228 14-3-3 family AT1G78300 60.9 6.1e-73 271.6
Lcy3g0403 . 6 259 14-3-3 family AT5G38480 90.2 2.9e-123 438.7
Lcy13g1545 . 6 252 14-3-3 family AT5G38480 85.8 1.4e-114 409.8
Lcy9g1719 . 6 252 14-3-3 family AT5G38480 85.0 7.0e-114 407.5
Lcy13g1561 . 5 250 14-3-3 family AT5G38480 71.4 1.9e-90 329.7
Lcy13g1460 . 10 303 14-3-3 family AT5G38480 61.6 2.1e-89 326.2
Lcy9g1731 . 5 242 14-3-3 family AT5G38480 71.3 2.5e-87 319.3
Lcy4g0704 . 7 294 14-3-3 family AT5G38480 60.3 1.1e-85 313.9
Lcy7g0331 . 8 223 14-3-3 family AT5G38480 63.6 4.9e-75 278.5
Lcy13g1545 . 3 242 14-3-3 family AT1G35160 90.4 4.9e-119 424.9
Lcy9g1719 . 4 242 14-3-3 family AT1G35160 89.5 5.5e-118 421.4
Lcy3g0403 . 6 240 14-3-3 family AT1G35160 86.4 2.2e-111 399.4
Lcy13g1460 . 1 298 14-3-3 family AT1G35160 60.7 6.3e-90 328.2
Lcy9g1731 . 5 236 14-3-3 family AT1G35160 72.2 5.9e-88 321.6
Lcy13g1561 . 5 246 14-3-3 family AT1G35160 66.8 3.8e-87 318.9
Lcy4g0704 . 2 284 14-3-3 family AT1G35160 60.0 1.6e-85 313.5
Lcy7g0331 . 8 204 14-3-3 family AT1G35160 62.4 1.9e-70 263.5
Lcy3g0403 . 5 254 14-3-3 family AT5G16050 86.0 1.2e-116 416.8
Lcy13g1545 . 3 253 14-3-3 family AT5G16050 78.9 4.7e-108 388.3
Lcy9g1719 . 4 251 14-3-3 family AT5G16050 78.3 1.1e-104 377.1
Lcy13g1460 . 10 300 14-3-3 family AT5G16050 58.8 3.6e-84 308.9
Lcy4g0704 . 86 293 14-3-3 family AT5G16050 71.3 8.3e-81 297.7
Lcy13g1561 . 2 252 14-3-3 family AT5G16050 62.8 1.4e-80 297.0
Lcy9g1731 . 5 239 14-3-3 family AT5G16050 66.2 1.2e-79 293.9
Lcy7g0331 . 3 211 14-3-3 family AT5G16050 55.3 1.1e-64 244.2
Lcy13g1460 . 9 298 14-3-3 family AT5G10450 72.4 3.4e-106 382.1
Lcy13g1545 . 3 251 14-3-3 family AT5G10450 77.2 6.4e-105 377.9
Lcy9g1719 . 1 242 14-3-3 family AT5G10450 78.2 7.8e-103 370.9
Lcy3g0403 . 7 259 14-3-3 family AT5G10450 73.6 1.3e-102 370.2
Lcy9g1731 . 5 236 14-3-3 family AT5G10450 67.2 4.0e-83 305.4
Lcy13g1561 . 5 246 14-3-3 family AT5G10450 64.9 5.3e-83 305.1
Lcy4g0704 . 1 285 14-3-3 family AT5G10450 55.4 1.4e-80 297.0
Lcy7g0331 . 3 204 14-3-3 family AT5G10450 57.1 1.0e-65 247.7
Lcy3g0403 . 4 260 14-3-3 family AT3G02520 91.1 1.2e-127 453.4
Lcy13g1545 . 6 252 14-3-3 family AT3G02520 86.3 9.3e-117 417.2
Lcy9g1719 . 5 258 14-3-3 family AT3G02520 83.2 1.7e-115 412.9
Lcy13g1460 . 10 300 14-3-3 family AT3G02520 62.5 1.3e-91 333.6
Lcy13g1561 . 1 249 14-3-3 family AT3G02520 67.7 8.2e-89 324.3
Lcy9g1731 . 1 248 14-3-3 family AT3G02520 69.2 4.1e-88 322.0
Lcy4g0704 . 4 285 14-3-3 family AT3G02520 59.9 4.6e-84 308.5
Lcy7g0331 . 8 228 14-3-3 family AT3G02520 59.7 3.7e-73 272.3
Lcy13g1460 . 9 298 14-3-3 family AT5G65430 72.8 6.5e-107 384.4
Lcy13g1545 . 8 242 14-3-3 family AT5G65430 80.1 3.4e-103 372.1
Lcy3g0403 . 7 241 14-3-3 family AT5G65430 78.8 4.4e-103 371.7
Lcy9g1719 . 1 242 14-3-3 family AT5G65430 78.2 1.7e-102 369.8
Lcy9g1731 . 5 236 14-3-3 family AT5G65430 68.9 2.0e-84 309.7
Lcy13g1561 . 5 246 14-3-3 family AT5G65430 66.5 2.0e-84 309.7
Lcy4g0704 . 1 285 14-3-3 family AT5G65430 56.8 7.3e-82 301.2
Lcy7g0331 . 8 204 14-3-3 family AT5G65430 60.0 1.3e-67 253.8
Lcy4g0704 . 1 310 14-3-3 family AT2G42590 68.6 4.6e-111 398.3
Lcy9g1731 . 3 240 14-3-3 family AT2G42590 76.9 2.6e-101 365.9
Lcy13g1561 . 3 252 14-3-3 family AT2G42590 74.8 9.7e-101 364.0
Lcy3g0403 . 8 248 14-3-3 family AT2G42590 73.0 1.1e-91 334.0
Lcy9g1719 . 8 245 14-3-3 family AT2G42590 71.0 1.2e-90 330.5
Lcy13g1545 . 8 248 14-3-3 family AT2G42590 70.1 3.5e-90 328.9
Lcy7g0331 . 6 222 14-3-3 family AT2G42590 63.6 8.5e-81 297.7
Lcy13g1460 . 11 300 14-3-3 family AT2G42590 53.1 5.0e-73 271.9
Lcy13g1561 . 1 250 14-3-3 family AT1G22300 77.2 1.8e-101 366.3
Lcy9g1731 . 1 240 14-3-3 family AT1G22300 77.1 2.4e-98 355.9
Lcy4g0704 . 6 289 14-3-3 family AT1G22300 64.8 1.9e-95 346.3
Lcy3g0403 . 4 246 14-3-3 family AT1G22300 70.4 8.3e-91 330.9
Lcy13g1545 . 8 246 14-3-3 family AT1G22300 69.5 8.6e-88 320.9
Lcy9g1719 . 8 245 14-3-3 family AT1G22300 68.5 5.6e-87 318.2
Lcy7g0331 . 5 209 14-3-3 family AT1G22300 66.3 7.8e-81 297.7
Lcy13g1460 . 11 300 14-3-3 family AT1G22300 54.1 3.0e-72 269.2
Lcy13g1561 . 1 250 14-3-3 family AT1G34760 75.6 4.4e-100 361.7
Lcy9g1731 . 1 243 14-3-3 family AT1G34760 78.6 5.7e-100 361.3
Lcy4g0704 . 72 293 14-3-3 family AT1G34760 80.6 1.2e-97 353.6
Lcy3g0403 . 4 250 14-3-3 family AT1G34760 70.4 6.0e-89 324.7
Lcy13g1545 . 8 243 14-3-3 family AT1G34760 71.6 3.9e-88 322.0
Lcy9g1719 . 8 249 14-3-3 family AT1G34760 69.4 8.6e-88 320.9
Lcy7g0331 . 5 212 14-3-3 family AT1G34760 69.5 1.3e-83 307.0
Lcy13g1460 . 11 299 14-3-3 family AT1G34760 52.6 4.7e-70 261.9
Lcy4g0704 . 3 289 14-3-3 family AT1G26480 66.9 2.7e-100 362.5
Lcy9g1731 . 3 244 14-3-3 family AT1G26480 76.4 3.6e-100 362.1
Lcy13g1561 . 2 250 14-3-3 family AT1G26480 74.3 1.4e-99 360.1
Lcy7g0331 . 2 219 14-3-3 family AT1G26480 73.5 6.5e-94 341.3
Lcy9g1719 . 8 247 14-3-3 family AT1G26480 73.8 1.6e-92 336.7
Lcy13g1545 . 8 260 14-3-3 family AT1G26480 71.7 2.7e-92 335.9
Lcy3g0403 . 5 256 14-3-3 family AT1G26480 72.0 5.2e-91 331.6
Lcy13g1460 . 11 296 14-3-3 family AT1G26480 54.5 1.9e-72 270.0
Lcy9g1731 . 1 234 14-3-3 family AT1G78220 50.6 3.9e-61 232.3