Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1460 ATGGCCGTCGCCGTGCCGGATAATCTCTCTCGTGAGCAATATGTGTACCTTGCGAAGCTTGCTGAGCAGGCCGAGAGATACGAGGAGATGGTTCAGTTCATGCAGAAACTTGTTCTTGGTTCAACCCCAGGCTCCGAGCTCTCTGTCGAGGAACGAAATCTTCTCTCTGTCGCTTACAAGAACGTGATTGGCTCACTTCGAGCCGCTTGGCGGATTGTCTCTTCCATCGAGCAGAAGGAGGAGAGCCGTAAGAATGAAGAGCATGTTGTTCTTGTTAAGGATTATAGATCAAAGGTTGAGTCTGAGCTTTCCGAAGTCTGTGCGAGTATTTTGCAGCTTTTGGACTCGAATCTCATTCCCTCGGCCTCTGCTAGTGAGTCTAAGGTCTTCTACTTGAAGATGAAGGGGGATTACCATAGGTATTTGGCGGAGTTTAAGGTTGGGGATGAGAGGAAAGCTGCTGCTGAGGATACTATGCTGGCTTATAGGGCTGCTCAGATCTTCAATTGGATTATTCTGAATTCTGATTTTGCACTTGTTGGATTTTATGTTACGAAGGATGTTGCAGCTGCGGATCTTGCACCCACTCATCCGATAAGGCTGGGCCTGGCACTCAATTTCTCTGTGTTTTACTTCGAGATTCTGAATCAGTCCGATAAAGCATGTAGCATGGCCAAGGAGCCAGCTAATGACAGTACTATAAGTGCACTTACAATCATTATGCTTTCCCATCCTTCTTTTGTGTGTTTACTCACCAGTTCTTATGCTTCTGATCAGGCATTTGAGGAAGCCATTGCTGAGCTGGACACCTTGGGTGAAGAATCATACAAGGACAGTACCCTCATCATGCAACTGTTGAGGGACAACCTCACTCTCTGGACTTCAGATGCGCAGGACCAGTTAGATGAGTCATAG 915 46.99 MAVAVPDNLSREQYVYLAKLAEQAERYEEMVQFMQKLVLGSTPGSELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEEHVVLVKDYRSKVESELSEVCASILQLLDSNLIPSASASESKVFYLKMKGDYHRYLAEFKVGDERKAAAEDTMLAYRAAQIFNWIILNSDFALVGFYVTKDVAAADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEPANDSTISALTIIMLSHPSFVCLLTSSYASDQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQDQLDES 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33156297 33159476 - Maker00034170 Lcy13g1460 651765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1460 304 Pfam 14-3-3 protein 187 232 IPR023410 -
Lcy13g1460 304 Pfam 14-3-3 protein 258 294 IPR023410 -
Lcy13g1460 304 Pfam 14-3-3 protein 17 166 IPR023410 -
Lcy13g1460 304 Gene3D - 2 304 IPR036815 -
Lcy13g1460 304 PANTHER 14-3-3 PROTEIN 258 299 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Lcy13g1460 304 SMART 1433_4 11 303 IPR023410 -
Lcy13g1460 304 ProSitePatterns 14-3-3 proteins signature 2. 276 295 IPR023409 -
Lcy13g1460 304 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Lcy13g1460 304 PIRSF 14-3-3 174 246 IPR000308 -
Lcy13g1460 304 PIRSF 14-3-3 249 304 IPR000308 -
Lcy13g1460 304 PIRSF 14-3-3 7 173 IPR000308 -
Lcy13g1460 304 SUPERFAMILY 14-3-3 protein 258 299 IPR036815 -
Lcy13g1460 304 Coils Coil 17 37 - -
Lcy13g1460 304 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
Lcy13g1460 304 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Lcy13g1460 304 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
Lcy13g1460 304 SUPERFAMILY 14-3-3 protein 10 231 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1460 Lcy-Chr13:33156297 Lcy3g0403 Lcy-Chr3:13416201 1.12E-114 dispersed
Lcy13g1460 Lcy-Chr13:33156297 Lcy13g1545 Lcy-Chr13:34264363 2.99E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1460 K06630 - csv:101222827 450.284