Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1472 ATGAAAGGCGATTTCGCTCACCCCAAGAGCAAGACTTCCAATATGTTATCTAAATTCCATCTCACCCACCCGTTTACCCACCCTCCGCCGCAGCAACCCGACGACGATTCCACCGCCGCCGCCGTTCCTCCGCCCTTTAAACATCTCTCCGACCACAACTCTGCCGCGGATGGCTCCACGATTGAGTTGGTCCGACGGCCGAGGGGTCGCCCACCGGGGTCCAAGAATAAACCGAAACCGCCTCTTGTCATAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTGCCCGGTGGAAACGACGTCGTTGAAGCTATTTCGCGGTTCTGTCGTCGGAAGAATATGGGACTTTGTGTTCTCAACGGCTCTGGGACGGTTGCGAATGTTTCTCTCCGGCAACCCTCTTCCACTCCCGGCGCTACCGTCACGTTCCACGGCCGGTTCGAGATTCTCTCCATTTCGGCCACTGTGTTTCCTCAGACGACGCCGTTTCCTCTCCCCAACGGCTTCACCATCTCCCTCGCTGGACCTCAGGGCCAAATCGTCGGCGGCTTGGTCGCCGGCGCCTTGATCGCCGCCGGTACTGTTTTCGTCGTCGCCTCGTCGTTCAACAATCCCTTGTTCCACCGGCTCTCCGATGAGGAAGAGATCAATAATTTGGCCTCCGGCGGCAGCGGCGGTGGCGAGGTTCATTCCCCACATGTCTCCGGCGGCGGAGATAGTAGCGGGCACGGGCACGGGCACGGGCAGAGTCACGGGCAGCAGCTTGTGGAATCGTGTGGAATGGCTATGTACAGTTGCCATGCGCCGTCCGATGTAATATGGGCGTCGACGGCAAGGCAGCCGCCGCCGTACTAA 867 59.63 MKGDFAHPKSKTSNMLSKFHLTHPFTHPPPQQPDDDSTAAAVPPPFKHLSDHNSAADGSTIELVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAISRFCRRKNMGLCVLNGSGTVANVSLRQPSSTPGATVTFHGRFEILSISATVFPQTTPFPLPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLFHRLSDEEEINNLASGGSGGGEVHSPHVSGGGDSSGHGHGHGQSHGQQLVESCGMAMYSCHAPSDVIWASTARQPPPY 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33305642 33306508 - Maker00033817 Lcy13g1472 651777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1472 288 MobiDBLite consensus disorder prediction 1 85 - -
Lcy13g1472 288 MobiDBLite consensus disorder prediction 222 257 - -
Lcy13g1472 288 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 207 IPR005175 -
Lcy13g1472 288 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 218 - -
Lcy13g1472 288 PIRSF ESCAROLA 7 288 IPR014476 GO:0003680(InterPro)
Lcy13g1472 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 51 261 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy13g1472 288 FunFam AT-hook motif nuclear-localized protein 93 225 - -
Lcy13g1472 288 CDD DUF296 93 206 IPR005175 -
Lcy13g1472 288 Gene3D - 92 225 - -
Lcy13g1472 288 ProSiteProfiles PPC domain profile profile. 89 227 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1472 Lcy-Chr13:33305642 Lcy7g0904 Lcy-Chr7:9115055 2.90E-52 dispersed
Lcy13g1472 Lcy-Chr13:33305642 Lcy9g1687 Lcy-Chr9:42096058 3.06E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1472 - - - 0.0