Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g1472 | ATGAAAGGCGATTTCGCTCACCCCAAGAGCAAGACTTCCAATATGTTATCTAAATTCCATCTCACCCACCCGTTTACCCACCCTCCGCCGCAGCAACCCGACGACGATTCCACCGCCGCCGCCGTTCCTCCGCCCTTTAAACATCTCTCCGACCACAACTCTGCCGCGGATGGCTCCACGATTGAGTTGGTCCGACGGCCGAGGGGTCGCCCACCGGGGTCCAAGAATAAACCGAAACCGCCTCTTGTCATAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTGCCCGGTGGAAACGACGTCGTTGAAGCTATTTCGCGGTTCTGTCGTCGGAAGAATATGGGACTTTGTGTTCTCAACGGCTCTGGGACGGTTGCGAATGTTTCTCTCCGGCAACCCTCTTCCACTCCCGGCGCTACCGTCACGTTCCACGGCCGGTTCGAGATTCTCTCCATTTCGGCCACTGTGTTTCCTCAGACGACGCCGTTTCCTCTCCCCAACGGCTTCACCATCTCCCTCGCTGGACCTCAGGGCCAAATCGTCGGCGGCTTGGTCGCCGGCGCCTTGATCGCCGCCGGTACTGTTTTCGTCGTCGCCTCGTCGTTCAACAATCCCTTGTTCCACCGGCTCTCCGATGAGGAAGAGATCAATAATTTGGCCTCCGGCGGCAGCGGCGGTGGCGAGGTTCATTCCCCACATGTCTCCGGCGGCGGAGATAGTAGCGGGCACGGGCACGGGCACGGGCAGAGTCACGGGCAGCAGCTTGTGGAATCGTGTGGAATGGCTATGTACAGTTGCCATGCGCCGTCCGATGTAATATGGGCGTCGACGGCAAGGCAGCCGCCGCCGTACTAA | 867 | 59.63 | MKGDFAHPKSKTSNMLSKFHLTHPFTHPPPQQPDDDSTAAAVPPPFKHLSDHNSAADGSTIELVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAISRFCRRKNMGLCVLNGSGTVANVSLRQPSSTPGATVTFHGRFEILSISATVFPQTTPFPLPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLFHRLSDEEEINNLASGGSGGGEVHSPHVSGGGDSSGHGHGHGQSHGQQLVESCGMAMYSCHAPSDVIWASTARQPPPY | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 33305642 | 33306508 | - | Maker00033817 | Lcy13g1472 | 651777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g1472 | 288 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
Lcy13g1472 | 288 | MobiDBLite | consensus disorder prediction | 222 | 257 | - | - | |
Lcy13g1472 | 288 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 93 | 207 | IPR005175 | - | |
Lcy13g1472 | 288 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 91 | 218 | - | - | |
Lcy13g1472 | 288 | PIRSF | ESCAROLA | 7 | 288 | IPR014476 | GO:0003680(InterPro) | |
Lcy13g1472 | 288 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 51 | 261 | IPR014476 | GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lcy13g1472 | 288 | FunFam | AT-hook motif nuclear-localized protein | 93 | 225 | - | - | |
Lcy13g1472 | 288 | CDD | DUF296 | 93 | 206 | IPR005175 | - | |
Lcy13g1472 | 288 | Gene3D | - | 92 | 225 | - | - | |
Lcy13g1472 | 288 | ProSiteProfiles | PPC domain profile profile. | 89 | 227 | IPR005175 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1472 | Lcy-Chr13:33305642 | Lcy7g0904 | Lcy-Chr7:9115055 | 2.90E-52 | dispersed | |
Lcy13g1472 | Lcy-Chr13:33305642 | Lcy9g1687 | Lcy-Chr9:42096058 | 3.06E-94 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g1472 | - | - | - | 0.0 |