Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1475 ATGGCGAGAGAGAAGATCAAGATAAGGAAGATCGATAACTTAACGGCGAGGCAGGTGACGTTCTCGAAGCGACGGCGAGGGCTCTTCAAGAAGGCGGAGGAGCTGTCAGTGCTCTGCGATGCTGAGGTGGCGCTGGTCATCTTCTCCGCCACCGGAAAGCTCTTCGAGTTTTCCAGTTCGAGCGTTAAGGATGTTATAGCGAGGTACAATTTGCACTCCAGTAACCTTGGAAAATTGGAATATCCATCGCTCGACCTGCAGCTTGAGAATAGCAGTCACGTCCGGTTGACCAAGGAAGTTGCAGATATGAGCCATCAACTAAGGCAGATGAGAGGAGAGGATCTTCAAGGATTGAACTTAGAAGATTTGAAGCGATTGGAAAGAGTGCTTGAAGTAGGCCTCGCACGAGTTCTTCAAACCAAGGAAAATAAGATTATGAGTGAAATTAATGCTCTCGAGCTTAAGGGAGCCAGGCTGATGGAAGAGAACAAGATGCTTAAGCAGCAGATGATAAGGTTGTCGAATGAAAGAATGCCGGTGCTTGTAGATAATTCCGACGTGGTGGTGCCGGAAGAAGGGGTTTCGTCGGAGTCCGCCGCCAACGTCTGCAGCTGCAACAGCGGCCCTCCCGCCGACGACGACAGCTCCGACACCTCCCTCAAATTAGGGCTTCCCTGCCCAAATTGA 687 50.66 MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALVIFSATGKLFEFSSSSVKDVIARYNLHSSNLGKLEYPSLDLQLENSSHVRLTKEVADMSHQLRQMRGEDLQGLNLEDLKRLERVLEVGLARVLQTKENKIMSEINALELKGARLMEENKMLKQQMIRLSNERMPVLVDNSDVVVPEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGLPCPN 228
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 33364433 33370534 + Maker00034135 Lcy13g1475 651780

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1475 228 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 Pfam K-box region 92 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy13g1475 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 Coils Coil 149 176 - -
Lcy13g1475 228 Gene3D - 13 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy13g1475 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy13g1475 228 MobiDBLite consensus disorder prediction 206 228 - -
Lcy13g1475 228 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy13g1475 228 FunFam Transcription factor, MADS-box 13 83 - -
Lcy13g1475 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1475 - - - - 0.0
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1475 Lcy-Chr13:33364433 Lcy6g0395 Lcy-Chr6:3748462 1.04E-50 dispersed
Lcy1g0831 Lcy-Chr1:7115428 Lcy13g1475 Lcy-Chr13:33364433 9.31E-80 wgd
Lcy1g0849 Lcy-Chr1:7257480 Lcy13g1475 Lcy-Chr13:33364433 2.31E-32 wgd
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g1795 . 10 234 MADS-box Gene Family AT3G58780 61.7 2.6e-68 256.1
Lcy1g0239 . 7 264 MADS-box Gene Family AT3G58780 58.2 3.8e-67 252.3
Lcy3g0344 . 1 197 MADS-box Gene Family AT1G26310 60.8 2.0e-60 229.9
Lcy5g2470 . 1 157 MADS-box Gene Family AT1G26310 71.7 1.3e-59 227.3
Lcy3g0341 . 1 173 MADS-box Gene Family AT1G26310 55.1 8.5e-43 171.4
Lcy13g0613 . 1 158 MADS-box Gene Family AT1G26310 58.5 9.4e-42 167.9
Lcy3g1266 . 1 158 MADS-box Gene Family AT1G26310 56.4 1.4e-40 164.1
Lcy5g2471 . 1 158 MADS-box Gene Family AT1G26310 55.3 1.7e-38 157.1
Lcy1g0239 . 9 164 MADS-box Gene Family AT4G09960 75.6 4.1e-60 228.8
Lcy5g1795 . 15 202 MADS-box Gene Family AT4G09960 62.6 4.1e-60 228.8
Lcy13g0613 . 1 239 MADS-box Gene Family AT3G61120 55.3 3.2e-63 239.2
Lcy6g0210 . 1 171 MADS-box Gene Family AT3G61120 51.5 1.3e-43 174.1
Lcy3g0341 . 1 173 MADS-box Gene Family AT3G61120 54.3 1.5e-41 167.2
Lcy3g1266 . 1 158 MADS-box Gene Family AT3G61120 56.3 5.5e-39 158.7
Lcy12g1715 . 1 213 MADS-box Gene Family AT4G11880 56.3 1.0e-52 204.1
Lcy13g0612 . 1 218 MADS-box Gene Family AT4G11880 53.4 6.2e-50 194.9
Lcy6g0207 . 109 284 MADS-box Gene Family AT4G11880 57.6 3.3e-43 172.6
Lcy11g1921 . 1 199 MADS-box Gene Family AT4G11880 50.2 2.2e-39 159.8
Lcy12g0427 . 1 220 MADS-box Gene Family AT5G13790 50.6 6.7e-46 181.8
Lcy6g0403 . 1 224 MADS-box Gene Family AT2G22630 51.8 1.1e-54 210.7
Lcy1g0849 . 1 167 MADS-box Gene Family AT2G22630 65.3 2.6e-51 199.5
Lcy12g1715 . 1 213 MADS-box Gene Family AT4G22950 59.9 2.8e-58 222.6
Lcy13g0612 . 1 218 MADS-box Gene Family AT4G22950 54.6 2.7e-53 206.1
Lcy6g0207 . 109 296 MADS-box Gene Family AT4G22950 54.8 1.3e-44 177.2
Lcy11g1921 . 1 199 MADS-box Gene Family AT4G22950 51.6 1.9e-43 173.3
Lcy3g0341 . 1 247 MADS-box Gene Family AT5G15800 73.5 1.3e-99 360.1
Lcy3g1266 . 1 227 MADS-box Gene Family AT5G15800 58.3 1.4e-69 260.4
Lcy6g0210 . 1 171 MADS-box Gene Family AT5G15800 56.3 2.0e-42 170.2
Lcy3g0344 . 1 175 MADS-box Gene Family AT5G15800 54.3 4.3e-42 169.1
Lcy5g2470 . 1 162 MADS-box Gene Family AT5G15800 54.3 4.5e-39 159.1
Lcy13g0612 . 1 161 MADS-box Gene Family AT2G45660 72.7 3.5e-55 211.8
Lcy11g1921 . 1 144 MADS-box Gene Family AT2G45660 70.1 2.1e-47 186.0
Lcy12g1715 . 1 156 MADS-box Gene Family AT2G45660 62.2 5.1e-46 181.4
Lcy6g0207 . 109 267 MADS-box Gene Family AT2G45660 59.7 5.3e-43 171.4
Lcy6g0403 . 1 225 MADS-box Gene Family AT4G37940 50.7 6.9e-54 208.0
Lcy1g0849 . 1 162 MADS-box Gene Family AT4G37940 64.8 2.7e-50 196.1
Lcy1g0831 . 1 223 MADS-box Gene Family AT2G22540 63.7 7.2e-68 254.6
Lcy13g1475 . 1 225 MADS-box Gene Family AT2G22540 58.0 1.7e-61 233.4
Lcy6g0395 . 1 152 MADS-box Gene Family AT2G22540 59.6 5.2e-42 168.7
Lcy13g1475 . 1 225 MADS-box Gene Family AT4G24540 58.1 1.3e-60 230.3
Lcy1g0831 . 1 223 MADS-box Gene Family AT4G24540 56.7 1.1e-57 220.7
Lcy6g0395 . 1 152 MADS-box Gene Family AT4G24540 54.5 5.5e-38 155.2
Lcy3g0341 . 1 171 MADS-box Gene Family AT2G03710 66.9 2.0e-57 219.5
Lcy3g1266 . 1 158 MADS-box Gene Family AT2G03710 66.7 9.0e-50 194.1
Lcy5g2471 . 1 159 MADS-box Gene Family AT2G03710 58.6 6.7e-45 177.9
Lcy13g0613 . 1 182 MADS-box Gene Family AT2G03710 51.4 8.2e-43 171.0
Lcy3g0344 . 1 173 MADS-box Gene Family AT2G03710 50.6 1.2e-38 157.1
Lcy3g0341 . 1 170 MADS-box Gene Family AT3G02310 86.5 5.4e-77 284.6
Lcy3g1266 . 1 186 MADS-box Gene Family AT3G02310 69.4 2.6e-63 239.2
Lcy13g0613 . 1 179 MADS-box Gene Family AT3G02310 60.4 1.6e-49 193.4
Lcy5g2471 . 1 158 MADS-box Gene Family AT3G02310 61.0 8.2e-49 191.0
Lcy6g0210 . 1 168 MADS-box Gene Family AT3G02310 56.7 1.3e-41 167.2
Lcy3g0344 . 1 181 MADS-box Gene Family AT3G02310 53.6 2.2e-41 166.4
Lcy5g2470 . 1 160 MADS-box Gene Family AT3G02310 55.6 2.4e-40 162.9
Lcy6g0207 . 109 254 MADS-box Gene Family AT5G62165 64.4 5.0e-46 181.4
Lcy13g0612 . 1 153 MADS-box Gene Family AT5G62165 56.9 1.9e-42 169.5
Lcy12g1715 . 1 154 MADS-box Gene Family AT5G62165 56.5 4.8e-41 164.9
Lcy11g1921 . 1 144 MADS-box Gene Family AT5G62165 59.6 4.1e-40 161.8
Lcy6g0403 . 1 235 MADS-box Gene Family AT2G14210 54.2 9.6e-57 217.6
Lcy1g0849 . 1 142 MADS-box Gene Family AT2G14210 67.1 1.2e-46 184.1
Lcy5g1795 . 10 234 MADS-box Gene Family AT2G42830 58.4 3.2e-63 239.2
Lcy1g0239 . 7 164 MADS-box Gene Family AT2G42830 75.9 2.1e-62 236.5
Lcy13g0613 . 1 244 MADS-box Gene Family AT2G45650 64.0 5.4e-82 301.6
Lcy3g0344 . 1 169 MADS-box Gene Family AT2G45650 51.5 4.8e-38 155.6
Lcy1g0239 . 9 164 MADS-box Gene Family AT2G45650 51.9 6.2e-38 155.2
Lcy5g2471 . 1 158 MADS-box Gene Family AT2G45650 57.0 1.8e-37 153.7
Lcy6g0207 . 102 253 MADS-box Gene Family AT5G51870 54.6 8.0e-41 164.5
Lcy3g0344 . 1 210 MADS-box Gene Family AT3G30260 53.2 3.5e-49 192.6
Lcy5g2470 . 1 157 MADS-box Gene Family AT3G30260 64.3 2.5e-47 186.4
Lcy3g1266 . 1 228 MADS-box Gene Family AT1G24260 76.8 3.0e-90 328.9
Lcy3g0341 . 1 245 MADS-box Gene Family AT1G24260 60.2 2.6e-70 262.7
Lcy13g0613 . 1 242 MADS-box Gene Family AT1G24260 50.8 1.2e-51 200.7
Lcy5g2470 . 1 158 MADS-box Gene Family AT1G24260 54.5 4.8e-40 162.2
Lcy6g0210 . 1 171 MADS-box Gene Family AT1G24260 53.4 1.1e-39 161.0
Lcy9g2236 . 1 231 MADS-box Gene Family AT3G54340 59.5 1.7e-69 260.0
Lcy9g1539 . 1 139 MADS-box Gene Family AT5G20240 71.9 2.4e-53 205.7
Lcy9g1539 . 1 139 MADS-box Gene Family AT5G20240 71.9 2.4e-53 205.7
Lcy9g2236 . 1 231 MADS-box Gene Family AT3G54340 59.5 1.7e-69 260.0
Lcy5g1795 . 10 234 MADS-box Gene Family AT3G58780 61.7 2.6e-68 256.1
Lcy1g0239 . 7 264 MADS-box Gene Family AT3G58780 58.2 3.8e-67 252.3
Lcy3g0341 . 1 247 MADS-box Gene Family AT5G15800 73.5 1.3e-99 360.1
Lcy3g1266 . 1 227 MADS-box Gene Family AT5G15800 58.3 1.4e-69 260.4
Lcy6g0210 . 1 171 MADS-box Gene Family AT5G15800 56.3 2.0e-42 170.2
Lcy3g0344 . 1 175 MADS-box Gene Family AT5G15800 54.3 4.3e-42 169.1
Lcy5g2470 . 1 162 MADS-box Gene Family AT5G15800 54.3 4.5e-39 159.1
Lcy3g0341 . 1 171 MADS-box Gene Family AT2G03710 66.9 2.0e-57 219.5
Lcy3g1266 . 1 158 MADS-box Gene Family AT2G03710 66.7 9.0e-50 194.1
Lcy5g2471 . 1 159 MADS-box Gene Family AT2G03710 58.6 6.7e-45 177.9
Lcy13g0613 . 1 182 MADS-box Gene Family AT2G03710 51.4 8.2e-43 171.0
Lcy3g0344 . 1 173 MADS-box Gene Family AT2G03710 50.6 1.2e-38 157.1
Lcy3g0341 . 1 170 MADS-box Gene Family AT3G02310 86.5 5.4e-77 284.6
Lcy3g1266 . 1 186 MADS-box Gene Family AT3G02310 69.4 2.6e-63 239.2
Lcy13g0613 . 1 179 MADS-box Gene Family AT3G02310 60.4 1.6e-49 193.4
Lcy5g2471 . 1 158 MADS-box Gene Family AT3G02310 61.0 8.2e-49 191.0
Lcy6g0210 . 1 168 MADS-box Gene Family AT3G02310 56.7 1.3e-41 167.2
Lcy3g0344 . 1 181 MADS-box Gene Family AT3G02310 53.6 2.2e-41 166.4
Lcy5g2470 . 1 160 MADS-box Gene Family AT3G02310 55.6 2.4e-40 162.9
Lcy5g1795 . 10 234 MADS-box Gene Family AT2G42830 58.4 3.2e-63 239.2
Lcy1g0239 . 7 164 MADS-box Gene Family AT2G42830 75.9 2.1e-62 236.5
Lcy13g0613 . 1 244 MADS-box Gene Family AT2G45650 64.0 5.4e-82 301.6
Lcy3g0344 . 1 169 MADS-box Gene Family AT2G45650 51.5 4.8e-38 155.6
Lcy1g0239 . 9 164 MADS-box Gene Family AT2G45650 51.9 6.2e-38 155.2
Lcy5g2471 . 1 158 MADS-box Gene Family AT2G45650 57.0 1.8e-37 153.7
Lcy3g1266 . 1 228 MADS-box Gene Family AT1G24260 76.8 3.0e-90 328.9
Lcy3g0341 . 1 245 MADS-box Gene Family AT1G24260 60.2 2.6e-70 262.7
Lcy13g0613 . 1 242 MADS-box Gene Family AT1G24260 50.8 1.2e-51 200.7
Lcy5g2470 . 1 158 MADS-box Gene Family AT1G24260 54.5 4.8e-40 162.2
Lcy6g0210 . 1 171 MADS-box Gene Family AT1G24260 53.4 1.1e-39 161.0
Lcy3g0344 . 1 197 MADS-box Gene Family AT1G26310 60.8 2.0e-60 229.9
Lcy5g2470 . 1 157 MADS-box Gene Family AT1G26310 71.7 1.3e-59 227.3
Lcy3g0341 . 1 173 MADS-box Gene Family AT1G26310 55.1 8.5e-43 171.4
Lcy13g0613 . 1 158 MADS-box Gene Family AT1G26310 58.5 9.4e-42 167.9
Lcy3g1266 . 1 158 MADS-box Gene Family AT1G26310 56.4 1.4e-40 164.1
Lcy5g2471 . 1 158 MADS-box Gene Family AT1G26310 55.3 1.7e-38 157.1
Lcy1g0239 . 9 164 MADS-box Gene Family AT4G09960 75.6 4.1e-60 228.8
Lcy5g1795 . 15 202 MADS-box Gene Family AT4G09960 62.6 4.1e-60 228.8
Lcy13g0613 . 1 239 MADS-box Gene Family AT3G61120 55.3 3.2e-63 239.2
Lcy6g0210 . 1 171 MADS-box Gene Family AT3G61120 51.5 1.3e-43 174.1
Lcy3g0341 . 1 173 MADS-box Gene Family AT3G61120 54.3 1.5e-41 167.2
Lcy3g1266 . 1 158 MADS-box Gene Family AT3G61120 56.3 5.5e-39 158.7
Lcy12g1715 . 1 213 MADS-box Gene Family AT4G11880 56.3 1.0e-52 204.1
Lcy13g0612 . 1 218 MADS-box Gene Family AT4G11880 53.4 6.2e-50 194.9
Lcy6g0207 . 109 284 MADS-box Gene Family AT4G11880 57.6 3.3e-43 172.6
Lcy11g1921 . 1 199 MADS-box Gene Family AT4G11880 50.2 2.2e-39 159.8
Lcy12g0427 . 1 220 MADS-box Gene Family AT5G13790 50.6 6.7e-46 181.8
Lcy6g0403 . 1 224 MADS-box Gene Family AT2G22630 51.8 1.1e-54 210.7
Lcy1g0849 . 1 167 MADS-box Gene Family AT2G22630 65.3 2.6e-51 199.5
Lcy12g1715 . 1 213 MADS-box Gene Family AT4G22950 59.9 2.8e-58 222.6
Lcy13g0612 . 1 218 MADS-box Gene Family AT4G22950 54.6 2.7e-53 206.1
Lcy6g0207 . 109 296 MADS-box Gene Family AT4G22950 54.8 1.3e-44 177.2
Lcy11g1921 . 1 199 MADS-box Gene Family AT4G22950 51.6 1.9e-43 173.3
Lcy13g0612 . 1 161 MADS-box Gene Family AT2G45660 72.7 3.5e-55 211.8
Lcy11g1921 . 1 144 MADS-box Gene Family AT2G45660 70.1 2.1e-47 186.0
Lcy12g1715 . 1 156 MADS-box Gene Family AT2G45660 62.2 5.1e-46 181.4
Lcy6g0207 . 109 267 MADS-box Gene Family AT2G45660 59.7 5.3e-43 171.4
Lcy6g0403 . 1 225 MADS-box Gene Family AT4G37940 50.7 6.9e-54 208.0
Lcy1g0849 . 1 162 MADS-box Gene Family AT4G37940 64.8 2.7e-50 196.1
Lcy1g0831 . 1 223 MADS-box Gene Family AT2G22540 63.7 7.2e-68 254.6
Lcy13g1475 . 1 225 MADS-box Gene Family AT2G22540 58.0 1.7e-61 233.4
Lcy6g0395 . 1 152 MADS-box Gene Family AT2G22540 59.6 5.2e-42 168.7
Lcy13g1475 . 1 225 MADS-box Gene Family AT4G24540 58.1 1.3e-60 230.3
Lcy1g0831 . 1 223 MADS-box Gene Family AT4G24540 56.7 1.1e-57 220.7
Lcy6g0395 . 1 152 MADS-box Gene Family AT4G24540 54.5 5.5e-38 155.2
Lcy6g0207 . 109 254 MADS-box Gene Family AT5G62165 64.4 5.0e-46 181.4
Lcy13g0612 . 1 153 MADS-box Gene Family AT5G62165 56.9 1.9e-42 169.5
Lcy12g1715 . 1 154 MADS-box Gene Family AT5G62165 56.5 4.8e-41 164.9
Lcy11g1921 . 1 144 MADS-box Gene Family AT5G62165 59.6 4.1e-40 161.8
Lcy6g0403 . 1 235 MADS-box Gene Family AT2G14210 54.2 9.6e-57 217.6
Lcy1g0849 . 1 142 MADS-box Gene Family AT2G14210 67.1 1.2e-46 184.1
Lcy6g0207 . 102 253 MADS-box Gene Family AT5G51870 54.6 8.0e-41 164.5
Lcy3g0344 . 1 210 MADS-box Gene Family AT3G30260 53.2 3.5e-49 192.6
Lcy5g2470 . 1 157 MADS-box Gene Family AT3G30260 64.3 2.5e-47 186.4
       

Regulatory proteins


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19396 None None None None Lcy TF