Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1475 ATGGCGAGAGAGAAGATCAAGATAAGGAAGATCGATAACTTAACGGCGAGGCAGGTGACGTTCTCGAAGCGACGGCGAGGGCTCTTCAAGAAGGCGGAGGAGCTGTCAGTGCTCTGCGATGCTGAGGTGGCGCTGGTCATCTTCTCCGCCACCGGAAAGCTCTTCGAGTTTTCCAGTTCGAGCGTTAAGGATGTTATAGCGAGGTACAATTTGCACTCCAGTAACCTTGGAAAATTGGAATATCCATCGCTCGACCTGCAGCTTGAGAATAGCAGTCACGTCCGGTTGACCAAGGAAGTTGCAGATATGAGCCATCAACTAAGGCAGATGAGAGGAGAGGATCTTCAAGGATTGAACTTAGAAGATTTGAAGCGATTGGAAAGAGTGCTTGAAGTAGGCCTCGCACGAGTTCTTCAAACCAAGGAAAATAAGATTATGAGTGAAATTAATGCTCTCGAGCTTAAGGGAGCCAGGCTGATGGAAGAGAACAAGATGCTTAAGCAGCAGATGATAAGGTTGTCGAATGAAAGAATGCCGGTGCTTGTAGATAATTCCGACGTGGTGGTGCCGGAAGAAGGGGTTTCGTCGGAGTCCGCCGCCAACGTCTGCAGCTGCAACAGCGGCCCTCCCGCCGACGACGACAGCTCCGACACCTCCCTCAAATTAGGGCTTCCCTGCCCAAATTGA 687 50.66 MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALVIFSATGKLFEFSSSSVKDVIARYNLHSSNLGKLEYPSLDLQLENSSHVRLTKEVADMSHQLRQMRGEDLQGLNLEDLKRLERVLEVGLARVLQTKENKIMSEINALELKGARLMEENKMLKQQMIRLSNERMPVLVDNSDVVVPEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGLPCPN 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33364433 33370534 + Maker00034135 Lcy13g1475 651780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1475 228 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 Pfam K-box region 92 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy13g1475 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 Coils Coil 149 176 - -
Lcy13g1475 228 Gene3D - 13 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy13g1475 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy13g1475 228 MobiDBLite consensus disorder prediction 206 228 - -
Lcy13g1475 228 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy13g1475 228 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy13g1475 228 FunFam Transcription factor, MADS-box 13 83 - -
Lcy13g1475 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1475 Lcy-Chr13:33364433 Lcy6g0395 Lcy-Chr6:3748462 1.04E-50 dispersed
Lcy1g0831 Lcy-Chr1:7115428 Lcy13g1475 Lcy-Chr13:33364433 9.31E-80 wgd
Lcy1g0849 Lcy-Chr1:7257480 Lcy13g1475 Lcy-Chr13:33364433 2.31E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19396 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1475 - - - 0.0