Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1478 ATGGCTCATCCTGGTTCTACCCAACTTTCTCATAAACTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAACACCCGTCTACATCTTGTTACTATCATTCCTACATCGCACGGTTTGAGGCATGATCCTGGAAGCCTTCAGCTCTTACGCAGTGCAAGTCGCCCAATGTATCCCGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTTTGGAATCAGGTGGCGGAGCTGGGACTGCTGTTCTAAAATCTGCAGCTGTGGTCTTGACAAGATCTTTTGATGCTTTACGTGGCACTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGCGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGACGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTACGTTCAGCCTTTACTGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCCGTCAAACAACGACTTCTGAATTTTGTTCGATCTTTGTCTACTGTTCTGGCATTTGCCTATTGTTTATCAAGGTGCTTGATTCAACAAGTACAAAAATTTGCTAATGAATCAAATGACTCCAGTGATACAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCCGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTCACGGCTGGGGGTCTTGGAACTGTATTGCTTACCCTTGCTGGTCGCGAGATATTTACTAACTTTCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTCTCTGGAACGGTTGAGGTTTGTGTCTTTTTAACATCACCATCACCTTATGGAATATGTTGA 972 42.9 MAHPGSTQLSHKLGIQSVHGCNKLHISGKGNTRLHLVTIIPTSHGLRHDPGSLQLLRSASRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAVVLTRSFDALRGTPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSRCLIQQVQKFANESNDSSDTRNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEVCVFLTSPSPYGIC 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33402353 33410061 - Maker00033967 Lcy13g1478 651783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1478 323 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 309 IPR045042 -
Lcy13g1478 323 Gene3D - 173 287 - -
Lcy13g1478 323 Pfam Mechanosensitive ion channel, beta-domain 273 310 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1478 Lcy-Chr13:33402353 Lcy6g1111 Lcy-Chr6:12579025 7.24E-93 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1478 K22047 - csv:101213477 553.518