Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1478 ATGGCTCATCCTGGTTCTACCCAACTTTCTCATAAACTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAACACCCGTCTACATCTTGTTACTATCATTCCTACATCGCACGGTTTGAGGCATGATCCTGGAAGCCTTCAGCTCTTACGCAGTGCAAGTCGCCCAATGTATCCCGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTTTGGAATCAGGTGGCGGAGCTGGGACTGCTGTTCTAAAATCTGCAGCTGTGGTCTTGACAAGATCTTTTGATGCTTTACGTGGCACTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGCGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGACGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTACGTTCAGCCTTTACTGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCCGTCAAACAACGACTTCTGAATTTTGTTCGATCTTTGTCTACTGTTCTGGCATTTGCCTATTGTTTATCAAGGTGCTTGATTCAACAAGTACAAAAATTTGCTAATGAATCAAATGACTCCAGTGATACAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCCGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTCACGGCTGGGGGTCTTGGAACTGTATTGCTTACCCTTGCTGGTCGCGAGATATTTACTAACTTTCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTCTCTGGAACGGTTGAGGTTTGTGTCTTTTTAACATCACCATCACCTTATGGAATATGTTGA 972 42.9 MAHPGSTQLSHKLGIQSVHGCNKLHISGKGNTRLHLVTIIPTSHGLRHDPGSLQLLRSASRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAVVLTRSFDALRGTPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSRCLIQQVQKFANESNDSSDTRNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEVCVFLTSPSPYGIC 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33402353 33410061 - Maker00033967 Lcy13g1478 651783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1478 323 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 309 IPR045042 -
Lcy13g1478 323 Gene3D - 173 287 - -
Lcy13g1478 323 Pfam Mechanosensitive ion channel, beta-domain 273 310 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1478 K22047 - - csv:101213477 553.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1478 Lcy-Chr13:33402353 Lcy6g1111 Lcy-Chr6:12579025 7.24E-93 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1988 . 849 1284 Mechanosensitive Ion Channel Family AT4G00290 62.8 2.0e-152 536.6
Lcy6g1111 . 93 801 Mechanosensitive Ion Channel Family AT5G10490 55.3 4.0e-193 672.2
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.5e-86 317.4
Lcy6g1111 . 122 769 Mechanosensitive Ion Channel Family AT1G58200 51.7 3.3e-166 582.8
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT1G58200 62.5 7.6e-99 359.0
Lcy8g1282 . 49 935 Mechanosensitive Ion Channel Family AT1G53470 56.2 2.5e-267 919.1
Lcy3g0859 . 93 946 Mechanosensitive Ion Channel Family AT1G53470 51.7 7.1e-238 821.2
Lcy8g1282 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 53.7 2.0e-250 862.8
Lcy8g1282 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.8e-292 1001.9
Lcy3g0859 . 63 944 Mechanosensitive Ion Channel Family AT1G78610 57.1 8.0e-271 930.6
Lcy8g1282 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.2 5.2e-238 821.6
Lcy3g0859 . 273 943 Mechanosensitive Ion Channel Family AT2G17000 59.8 2.3e-225 779.6
Lcy8g1282 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 50.6 2.5e-163 573.2
Lcy9g1946 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 53.2 2.7e-182 636.3
Lcy2g0950 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 7.0e-199 691.4
Lcy9g1946 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 56.5 1.7e-197 686.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71