Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1480 ATGAGGAAGGCAAGCCGTCAATCCAAACATACGAGCGAAGCCGATGCCTCGTCATCGTCGGTCACATCGGCTACGGACAATAAGGACTACGAAAAGAGAATTCGCGAGCTCGAGCGTGAAAATGAAGCGTTTCAGAAGGAAATTAAGAATCTAAAAGACAGATTAGAAATTGCTTCATCAAGCGCTGCAAATAGTGCTAAAAAACTCAGAGAAGGTTATATTCAGAAGTTGGATGTTCTTGAAGGCCAGGTTACAGAATTGAAGAAGAAACTAGACGTTCAATCTCAGCTTTCAACCAGAAGGCAAAAAGGTGATGGAGCAACGAAACAGACAGATCTTGAGATCATGAGTTTGAAGGCTCAGAAGGTTCAACTGCAATGTAAGATGAAGCTAGAGTCTGTTCAGTTCAGATTATGTAAAGGTTCATTGGAGAAGGAAATTCTTCAGCTCAAGAGAGAGAATAGAAGAAATGAGCATGAGATGAATAAGCTCCTAACTTCAAACGAAAGACTAAAGATGGCAAGTCATATTCTTTTTGAGCCGATCTATTGTGTTTCTCAACTTTTTTTATCATATTTATTTATAAAACATCTTCATGGTAAACGTTTTGTTATTTTCTTTCTTGAGGTTCTGCAACGGAAGACCGAGGAAGCTTCTGAAATTACAAAAAGGATGAGAAATCTTTTGGAATCTCGAAGGACTTCTGCACAAAGAAGAGCAGGTGCCAGACATGGAAATATTACTTCTAGTCAGTATGTTGAGAATGAATTTGAAGTCACCGCGAGGTTACATGAGTTGTGTTCCCAGTACGAGCATCAAATAGAAGAGAAGGATAAGGAGATTGCAAAACTTCAAGAAGAAGCAGATGCGATGAAGCAAGAAAAATCAGGGAACCTACCACAGGAGACTGATGTCAACATATTGGATAACAATCAAGATATGAATGAACTTAAGGAACAGATGGTCATATTAAGTGGTTTGGTTAACCAAATGCGAATCCAGAAGTTCAACCATACACATAAGGACGCATCAAAGGATGATTCTGGTCCAACCTCTGCCAGCATTGGGAGTAATAATCTGTTTGATCAGTTCGATACGCCTGGAGTAGAACATCGGCAAGGATTTGACATCGTGACAAAGAGAACAGTAAAAGCAGAATGCTGCTCTTGTAGTAAGAAATCACTATGCAAAACAATGAAGTGCAAATGCCGATCAACTGGAAGCAGCTGTGGCACATCATGTGGCTGTGCGCTTGGAAAGTGCAGCAACAGAGATGAGAAACCGGGTGAGATAGTCGATGAATTTGGGCCACCAATGAAGCCTTTATCTGACATAAAAAATGTATTGTTGACTGGCAACACATTCCGATCCCGTGGAGCCATACGACGAGAATTTGTCTACTGCATTTTCGACTCCAAGAAATTCGTAAACATCCTCGTCAAAGATCGGACTCAACGTTCGCAGTTCATCGAGACTCAAGTCCTTCAGCTGGCAGTTCTTTCC 1503 40.98 MRKASRQSKHTSEADASSSSVTSATDNKDYEKRIRELERENEAFQKEIKNLKDRLEIASSSAANSAKKLREGYIQKLDVLEGQVTELKKKLDVQSQLSTRRQKGDGATKQTDLEIMSLKAQKVQLQCKMKLESVQFRLCKGSLEKEILQLKRENRRNEHEMNKLLTSNERLKMASHILFEPIYCVSQLFLSYLFIKHLHGKRFVIFFLEVLQRKTEEASEITKRMRNLLESRRTSAQRRAGARHGNITSSQYVENEFEVTARLHELCSQYEHQIEEKDKEIAKLQEEADAMKQEKSGNLPQETDVNILDNNQDMNELKEQMVILSGLVNQMRIQKFNHTHKDASKDDSGPTSASIGSNNLFDQFDTPGVEHRQGFDIVTKRTVKAECCSCSKKSLCKTMKCKCRSTGSSCGTSCGCALGKCSNRDEKPGEIVDEFGPPMKPLSDIKNVLLTGNTFRSRGAIRREFVYCIFDSKKFVNILVKDRTQRSQFIETQVLQLAVLS 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33418329 33425471 + Maker00033965 Lcy13g1480 651785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1480 501 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 9 427 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005875(PANTHER)|GO:0007018(InterPro)|GO:0007052(PANTHER)|GO:0051231(PANTHER)
Lcy13g1480 501 Coils Coil 20 61 - -
Lcy13g1480 501 Coils Coil 140 167 - -
Lcy13g1480 501 Coils Coil 211 231 - -
Lcy13g1480 501 MobiDBLite consensus disorder prediction 339 358 - -
Lcy13g1480 501 MobiDBLite consensus disorder prediction 11 25 - -
Lcy13g1480 501 MobiDBLite consensus disorder prediction 1 34 - -
Lcy13g1480 501 Coils Coil 70 97 - -
Lcy13g1480 501 Coils Coil 267 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1480 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1480 Lcy-Chr13:33418329 Lcy9g2079 Lcy-Chr9:45530633 1.82E-31 dispersed
Lcy13g1480 Lcy-Chr13:33418329 Lcy9g1685 Lcy-Chr9:42067693 2.25E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007970 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 1 2 35