Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1481 ATGACAAAACTCGATGTTCCGTCCGCCTCTGAGGCTAGCGGAGCAACGTCGGCGGCCGGCTCCTCTGCCTCCAAGAAGCCTGAGGCCAAGGAAATCAAACTATGGGGCGGCCGCTTCCAGGAGAGCGTCACAGACGCCGTCGAACGCTTTACAGAGTCGATCTCATATGATAAGGACCTTTACAAGCATGACATCAGAGGCAGTCGTGCTCATGCATCCATGCTCGCCAAGCAGGGATTGATGAGTATCAGTGACAGAGACAGTATTCTAGCAGGCCTCGATGAGATCGAGAGGCGCATTCAAAATGGCGAGTTCGTCTGGAGAGCTGATAGGGAGGACGTTCACATGAACATTGAAGCTGCGCTTACTGATTTGATTGGCGAACCTGCCAAGAAACTGCATACTGCTCGGAGCCGCAACGACCAGGTTGCAACTGATTTTCGCTTGTGGTGCCGAGATGCTATCGATTCGATTGTCGAGAGGATTAAAGATTTTCAGGTTGCGATGGTAGACTTGGCAATTAGAAATGCAGGAATTATTGTTCCAGGTTATACGCATTTGCAGAGAGCACAGCCAGTCCTACTTCAGCATCTTCTCTTAGCATTCGTTGAGCAGCTTGATCGGGATGCCGGTCGTTTGCTGGACTGCAGAGCTAGACTGAATTTCTGCCCCTTAGGAGCTTGTGCATTGGCTGGTACTGGCCTCCCAATTGATCGATTCATGACTTCAAGTGCTTTAGGATTCTCATCTCCTTTGAGAAACAGTATCGATGCCGTTTCGGACCGCGATTTTGCAATGGAATTTCTTTCTGCCAATTCTATTACAGCCATTCATCTTTCCCGTCTGGGAGAAGAATGGGTATTGTGGTCCTCCGAAGAGTTCGGATTCATCACACCTAATGACGCTGTTTCAACTGGAAGTAGCATAATGCCTCAGAAGAAAAATCCAGATCCAATGGAACTTGTTCGTGGAAAGTCTGGTCGAGTCATAGGTGATTTAGTAACCCTTCTAACATTATGCAAAGGACTTCCTCTTGCATACAACCGCGATCTGCAGGAAGACAAGGAACCTGTATTTGATAGTGTTAAGACAGTTTTAGGGATGCTTGAGGTTTCAGCTGAGTTTGCACGGAACATCAGTTACAATCAAGATAGAATAAAGAAAGCCTTGCCTGCTGGTCATCTTGATGCAACCACACTTGCAGACTATCTTGTGCATAAGGATAGGACGAATTACCCACCTATGAATGTAGCACTTCAATCACATGACTCTCGAACACTGGGAATGCCTTTCAGAACATCTCATGATATTGTAGGCAAGTCTGTTGCCATGTGTCTTGGAAAGAACTGCCAGCTGAAGGACTTGAGTCTCGATGAACTGCGAACGTTGAGTCCGATCTTTGACGAGGATGTTTACGAATTTCTTGGAGTCGAAAATGCAGTAGACAAATTCTCGTCGTATGGCTCCACGGGATCGGAATGTGTTGCCAGTCAACTCCAATATTGGATCGAAAAACTTGGCATTAGTCAGTAG 1533 47.03 MTKLDVPSASEASGATSAAGSSASKKPEAKEIKLWGGRFQESVTDAVERFTESISYDKDLYKHDIRGSRAHASMLAKQGLMSISDRDSILAGLDEIERRIQNGEFVWRADREDVHMNIEAALTDLIGEPAKKLHTARSRNDQVATDFRLWCRDAIDSIVERIKDFQVAMVDLAIRNAGIIVPGYTHLQRAQPVLLQHLLLAFVEQLDRDAGRLLDCRARLNFCPLGACALAGTGLPIDRFMTSSALGFSSPLRNSIDAVSDRDFAMEFLSANSITAIHLSRLGEEWVLWSSEEFGFITPNDAVSTGSSIMPQKKNPDPMELVRGKSGRVIGDLVTLLTLCKGLPLAYNRDLQEDKEPVFDSVKTVLGMLEVSAEFARNISYNQDRIKKALPAGHLDATTLADYLVHKDRTNYPPMNVALQSHDSRTLGMPFRTSHDIVGKSVAMCLGKNCQLKDLSLDELRTLSPIFDEDVYEFLGVENAVDKFSSYGSTGSECVASQLQYWIEKLGISQ 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33424942 33430722 - Maker00034156 Lcy13g1481 651786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1481 510 FunFam Argininosuccinate lyase chloroplastic 260 408 - -
Lcy13g1481 510 ProSitePatterns Fumarate lyases signature. 306 315 IPR020557 GO:0003824(InterPro)
Lcy13g1481 510 Hamap Argininosuccinate lyase [argH]. 33 504 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Lcy13g1481 510 Pfam Lyase 37 331 IPR022761 -
Lcy13g1481 510 Gene3D Fumarase/aspartase (Central domain) 150 390 - -
Lcy13g1481 510 PANTHER ARGININOSUCCINATE LYASE 28 508 IPR009049 GO:0004056(PANTHER)|GO:0004056(InterPro)|GO:0005829(PANTHER)|GO:0042450(PANTHER)|GO:0042450(InterPro)
Lcy13g1481 510 FunFam Argininosuccinate lyase 53 153 - -
Lcy13g1481 510 Pfam Argininosuccinate lyase C-terminal 426 482 IPR029419 -
Lcy13g1481 510 CDD Argininosuccinate_lyase 53 506 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Lcy13g1481 510 Gene3D - 53 260 IPR024083 -
Lcy13g1481 510 NCBIfam argininosuccinate lyase 34 407 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Lcy13g1481 510 PRINTS Fumarate lyase superfamily signature 306 322 IPR000362 -
Lcy13g1481 510 PRINTS Fumarate lyase superfamily signature 178 196 IPR000362 -
Lcy13g1481 510 PRINTS Fumarate lyase superfamily signature 262 289 IPR000362 -
Lcy13g1481 510 PRINTS Fumarate lyase superfamily signature 133 151 IPR000362 -
Lcy13g1481 510 MobiDBLite consensus disorder prediction 1 27 - -
Lcy13g1481 510 PRINTS Argininosuccinate lyase family signature 341 360 - -
Lcy13g1481 510 PRINTS Argininosuccinate lyase family signature 173 193 - -
Lcy13g1481 510 PRINTS Argininosuccinate lyase family signature 262 286 - -
Lcy13g1481 510 PRINTS Argininosuccinate lyase family signature 306 322 - -
Lcy13g1481 510 PRINTS Argininosuccinate lyase family signature 224 240 - -
Lcy13g1481 510 PRINTS Argininosuccinate lyase family signature 132 154 - -
Lcy13g1481 510 MobiDBLite consensus disorder prediction 1 23 - -
Lcy13g1481 510 SUPERFAMILY L-aspartase-like 34 506 IPR008948 GO:0003824(InterPro)
Lcy13g1481 510 Gene3D - 391 408 - -
Lcy13g1481 510 Gene3D - 424 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1481 K01755 - - csv:101213711 887.486
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1481 Lcy-Chr13:33424942 Lcy9g1684 Lcy-Chr9:42063152 1.09E-285 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237