Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1484 ATGAAGCTTAAGAAACGATCGATCAGCGAGAATGACATTTCCACTCTCTTACAAAGGTACTCTCCGACGACGGTGCTGGCTTTGCTACAAGAAGTGGCACAAGTTCCTCCAGAAGCGAAGTTTGATTGGAACGAGTTGGTTAAAAATACTTCGACCGGGATTTCTAATCCTCGGGAATATCAGATGCTATGGCGGCATTTGGCTTATCGTCATGCATTGCTTGATAATTTGGAAGACGAGAAAGCACCTTTGGAAGATGACAGTGACTTAGAGTATGATTTAGAGCCGTTTCCATCCGTCAGCTGCGAAACTTTAACGGAGGCTGCGGCGTGTGCGAAGGTATTTATCTCGTCTGGTTCTCCTAGTGACTTGAATGTTCCAAGCAGTAGCACAATAGAGGCTCCATTAACTATTAACCTACCTAGAAGTCACATGGCTGGGGTTCAGTTTGATAATGTAGACCCTGCTTGCTCCATCAAAGGTGCGAGCATCACAGTTCCTGTTTCTGTTCAGCGACAGCCAGTCCTAACCCCACCATCTGCTGAAGGATTGAATGCAAATGGATCAACATATGGCAACAATGCGTCTCGAAGGAAAAGAAAACCTTGGTCAGAGGCGGAGGACCTTGAGTTGATGGCTGCAGTGAAGAAATGTGGTGAAGGAAATTGGGCAAACATCTTACGTGGAGACTTCTTGAGCGATAGAACTGCTTCACAGTTATCTCAGGATTCTTGGGTTGGGGAAAAACCCTTGAGCGTCATGTTTCCCCAGCTTTATCTTTTATCTGAAAAGAGGTTGCATTCGGTAGCTTCTATCTTCCCCGATTCCGACTTCTCTTTGCCTTCCCTAGACTTTCGTCACCTCACTGATCGGGAAGCTACAGAGATCACTTATCTCCCTTCCTTGTTGGCTGACTAG 918 46.08 MKLKKRSISENDISTLLQRYSPTTVLALLQEVAQVPPEAKFDWNELVKNTSTGISNPREYQMLWRHLAYRHALLDNLEDEKAPLEDDSDLEYDLEPFPSVSCETLTEAAACAKVFISSGSPSDLNVPSSSTIEAPLTINLPRSHMAGVQFDNVDPACSIKGASITVPVSVQRQPVLTPPSAEGLNANGSTYGNNASRRKRKPWSEAEDLELMAAVKKCGEGNWANILRGDFLSDRTASQLSQDSWVGEKPLSVMFPQLYLLSEKRLHSVASIFPDSDFSLPSLDFRHLTDREATEITYLPSLLAD 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33456622 33459838 - Maker00034002 Lcy13g1484 651789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1484 305 ProSiteProfiles Myb-like domain profile. 195 239 IPR001005 -
Lcy13g1484 305 Pfam Myb-like DNA-binding domain 200 239 IPR001005 -
Lcy13g1484 305 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 242 - -
Lcy13g1484 305 MobiDBLite consensus disorder prediction 177 197 - -
Lcy13g1484 305 MobiDBLite consensus disorder prediction 177 202 - -
Lcy13g1484 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 228 IPR017930 -
Lcy13g1484 305 SUPERFAMILY Homeodomain-like 197 241 IPR009057 -
Lcy13g1484 305 CDD SANT_TRF 201 245 - -
Lcy13g1484 305 Gene3D - 192 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1484 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1484 Lcy-Chr13:33456622 Lcy13g2333 Lcy-Chr13:42163546 1.46E-20 dispersed
Lcy13g1484 Lcy-Chr13:33456622 Lcy9g1682 Lcy-Chr9:42043339 1.38E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g521 . . Bda01g00909 . . . . . . Cmo12g00157 . Cma09g00595 . Car12g00185 Sed04g0197 Cpe06g00456 Cpe07g00173 Bhi04g01388 Tan02g2476 Cmetu03g1900 . Hepe10g0434 . Lcy13g1484 . . . . . . . Cone4ag1295 Cone7ag0860 . . . . Chy04g00204 . . . . . Bpe02g01148 Bpe14g00483 . . Sed13g1535 . Cmo09g00581 Cma12g00203 . . Car09g00526 . . Bhi09g02501 Tan01g3854 . . . Mch11g0711 . Cla11g01427 Cam11g1483 Cec11g1513 Cco11g1509 Clacu11g1644 Cmu11g1462 Cre11g1880 . . . Cme04g00235
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19397 None None None None Lcy TF