Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g1489 | ATGTACGGACGCGCTCAATCGCTGACCATGGGCGATCAGATCGCCTCCGGCCCCGACTGTGGCGACAGCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGGAGCACACTCTCTCGAAGACGGTGCTGGAGTAGGCGGTATCATCGAGGATCTTAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGTTCCGACATGGCTATTCAACGCGGCGATGGTTCAAGCCAGCTCACACTTTCGTTCCGTGGCCAAGTCTATCTTTTCGACGCTGTCTCTCCCGAGAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGTGTGGATTTGGTAAATCAGAATCAGAGGAATGCTGTGGATTTCCCCGGACGGAGTAGTCAACCGCAGAGGGCAGCCTCGTTAAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGGTAGTGTCTCAGAGTCAGGTCAAGATGAAAGTCCACCAGAAACTTCATGTACAAATTGTGGCATAAGTTCAATGGCGACCCCAATGATGCGGCGAGGACCGTCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACTCCGGCCGAGCAGTGTGAAAGTGATGCTGCCAAGGACTTAGACTGCAGACATGGTACCCATGCACACAGCAATCTCGCTTCTTTCTCAAATGGTGATACCTCTGCTTTAATGGCTGAGCATTAG | 891 | 50.62 | MYGRAQSLTMGDQIASGPDCGDSGEPLDNRLVRYGAHSLEDGAGVGGIIEDLNPDAVYASAGDGSDMAIQRGDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSESGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDAAKDLDCRHGTHAHSNLASFSNGDTSALMAEH | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 33498077 | 33505353 | + | Maker00034160 | Lcy13g1489 | 651794 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g1489 | 296 | MobiDBLite | consensus disorder prediction | 126 | 146 | - | - | |
Lcy13g1489 | 296 | MobiDBLite | consensus disorder prediction | 171 | 209 | - | - | |
Lcy13g1489 | 296 | ProSiteProfiles | GATA-type zinc finger domain profile. | 200 | 259 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy13g1489 | 296 | ProSiteProfiles | Tify domain profile. | 71 | 106 | IPR010399 | - | |
Lcy13g1489 | 296 | CDD | ZnF_GATA | 205 | 252 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy13g1489 | 296 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 51 | 287 | IPR045280 | GO:0006355(InterPro) | |
Lcy13g1489 | 296 | SMART | GATA_3 | 200 | 253 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy13g1489 | 296 | ProSitePatterns | GATA-type zinc finger domain. | 206 | 233 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy13g1489 | 296 | Pfam | CCT motif | 138 | 180 | IPR010402 | GO:0005515(InterPro) | |
Lcy13g1489 | 296 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 202 | 251 | - | - | |
Lcy13g1489 | 296 | MobiDBLite | consensus disorder prediction | 277 | 296 | - | - | |
Lcy13g1489 | 296 | Gene3D | - | 196 | 256 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Lcy13g1489 | 296 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lcy13g1489 | 296 | MobiDBLite | consensus disorder prediction | 126 | 142 | - | - | |
Lcy13g1489 | 296 | SMART | tify_2 | 71 | 106 | IPR010399 | - | |
Lcy13g1489 | 296 | Pfam | tify domain | 74 | 105 | IPR010399 | - | |
Lcy13g1489 | 296 | ProSiteProfiles | CCT domain profile. | 138 | 180 | IPR010402 | GO:0005515(InterPro) | |
Lcy13g1489 | 296 | Pfam | GATA zinc finger | 206 | 242 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1489 | Lcy-Chr13:33498077 | Lcy4g0098 | Lcy-Chr4:1372254 | 4.30E-77 | dispersed | |
Lcy13g1489 | Lcy-Chr13:33498077 | Lcy2g0559 | Lcy-Chr2:4789191 | 1.10E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19398 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g1489 | - | - | - | 0.0 |