Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1489 ATGTACGGACGCGCTCAATCGCTGACCATGGGCGATCAGATCGCCTCCGGCCCCGACTGTGGCGACAGCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGGAGCACACTCTCTCGAAGACGGTGCTGGAGTAGGCGGTATCATCGAGGATCTTAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGTTCCGACATGGCTATTCAACGCGGCGATGGTTCAAGCCAGCTCACACTTTCGTTCCGTGGCCAAGTCTATCTTTTCGACGCTGTCTCTCCCGAGAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGTGTGGATTTGGTAAATCAGAATCAGAGGAATGCTGTGGATTTCCCCGGACGGAGTAGTCAACCGCAGAGGGCAGCCTCGTTAAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGGTAGTGTCTCAGAGTCAGGTCAAGATGAAAGTCCACCAGAAACTTCATGTACAAATTGTGGCATAAGTTCAATGGCGACCCCAATGATGCGGCGAGGACCGTCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACTCCGGCCGAGCAGTGTGAAAGTGATGCTGCCAAGGACTTAGACTGCAGACATGGTACCCATGCACACAGCAATCTCGCTTCTTTCTCAAATGGTGATACCTCTGCTTTAATGGCTGAGCATTAG 891 50.62 MYGRAQSLTMGDQIASGPDCGDSGEPLDNRLVRYGAHSLEDGAGVGGIIEDLNPDAVYASAGDGSDMAIQRGDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSESGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDAAKDLDCRHGTHAHSNLASFSNGDTSALMAEH 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33498077 33505353 + Maker00034160 Lcy13g1489 651794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1489 296 MobiDBLite consensus disorder prediction 126 146 - -
Lcy13g1489 296 MobiDBLite consensus disorder prediction 171 209 - -
Lcy13g1489 296 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1489 296 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Lcy13g1489 296 CDD ZnF_GATA 205 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1489 296 PANTHER GATA TRANSCRIPTION FACTOR 28 51 287 IPR045280 GO:0006355(InterPro)
Lcy13g1489 296 SMART GATA_3 200 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1489 296 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1489 296 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
Lcy13g1489 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 251 - -
Lcy13g1489 296 MobiDBLite consensus disorder prediction 277 296 - -
Lcy13g1489 296 Gene3D - 196 256 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy13g1489 296 MobiDBLite consensus disorder prediction 1 22 - -
Lcy13g1489 296 MobiDBLite consensus disorder prediction 126 142 - -
Lcy13g1489 296 SMART tify_2 71 106 IPR010399 -
Lcy13g1489 296 Pfam tify domain 74 105 IPR010399 -
Lcy13g1489 296 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Lcy13g1489 296 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1489 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1489 Lcy-Chr13:33498077 Lcy4g0098 Lcy-Chr4:1372254 4.30E-77 dispersed
Lcy13g1489 Lcy-Chr13:33498077 Lcy2g0559 Lcy-Chr2:4789191 1.10E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy3g2308 . 1 230 Tify Gene Family AT3G21175 57.4 2.9e-60 229.2
Lcy13g1489 . 47 297 Tify Gene Family AT4G24470 53.9 3.9e-69 259.2
Lcy4g0098 . 89 267 Tify Gene Family AT4G24470 61.3 5.8e-49 192.2
Lcy3g2308 . 1 265 Tify Gene Family AT1G51600 60.8 5.0e-82 302.0
Lcy4g0098 . 86 287 Tify Gene Family AT1G51600 57.5 4.1e-52 202.6
Lcy13g1489 . 47 297 Tify Gene Family AT4G24470 53.9 3.9e-69 259.2
Lcy4g0098 . 89 267 Tify Gene Family AT4G24470 61.3 5.8e-49 192.2
Lcy3g2308 . 1 265 Tify Gene Family AT1G51600 60.8 5.0e-82 302.0
Lcy4g0098 . 86 287 Tify Gene Family AT1G51600 57.5 4.1e-52 202.6
Lcy3g2308 . 1 230 Tify Gene Family AT3G21175 57.4 2.9e-60 229.2
Lcy13g0311 . 1 186 Tify Gene Family AT4G14713 51.0 1.8e-44 176.8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19398 None None None None Lcy TF