Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1492 ATGCCTCGTCGGAGCTCCGGAGGTCAGTATTCCGTCGATTTCTCCTTTATTTCTTCTTATGTCAATCGTCATATCTGCGTTCAGATGATTTTATCTCGCCAGATTTTGTTTCCGGTTATTTTTTCCTGTCTGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACTACGCAACCCTCCGGCGCCAGGGGAAAGTTTGTCGGGTAGCCGTTGTTAGGGCCTGCGTTTTAGGTGATATCTACCCTGTATGTCCGTGGTGGGTTGGGTTCTTGCCCGGGCTCCTTGGAGATGCGGCTTTACCCAAGGCATTTAGTTCTGCTCCTCCACCCGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGAATTGGTGCCACTATTGCTCAAGGTATGGCCTTTGGTACCGGAAGTGCGGTGGCTCACAGGGCTGTTGATGCTGTAATGGGTCCTCGAGTCATCCAGCACGAGACTGTTGATTCATCTTCTTCTTCAGCACCTGCTGTAGCGAGTAATCCTGGAGGATCTGAGGCTTGTAATGTTCAATCAAAGGCCTTTCAGGATTGCCTGAACCATTATGGAAGTGACATTGGAAAGTGCCAGTTCTACTTGGATATGTTGCAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAA 666 51.5 MPRRSSGGQYSVDFSFISSYVNRHICVQMILSRQILFPVIFSCLDDLLPVPPLALHYATLRRQGKVCRVAVVRACVLGDIYPVCPWWVGFLPGLLGDAALPKAFSSAPPPAPVQGGGGGSMLGGIGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSSSSAPAVASNPGGSEACNVQSKAFQDCLNHYGSDIGKCQFYLDMLQECRRGSGSVLGA 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33571554 33573233 - Maker00034041 Lcy13g1492 651797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1492 221 Pfam CHCH domain 180 213 IPR010625 -
Lcy13g1492 221 SUPERFAMILY Cysteine alpha-hairpin motif 178 213 IPR009069 -
Lcy13g1492 221 PANTHER COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 105 217 - GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0007005(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1492 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1492 Lcy-Chr13:33571554 Lcy13g1494 Lcy-Chr13:33581462 1.57E-146 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g536 . . . . . . . . . Cmo12g00164 . . . Car12g00191 Sed04g0192 . Cpe07g00179 Bhi04g01401 Tan02g2454 Cmetu03g0187 . Hepe10g0442 . Lcy13g1492 . . . . . . . . . . . . . . . . . . . . Bpe05g00436 . . . . . Cma12g00210 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011813 2 1 2 1 2 0 2 0 0 1 0 0 0 1 1 1 0 3 2 0 1 1 1 0 1 0 1 2 1 1 28