Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g1498 | ATGCCTCCACTGGGTGTGCAACTCTTCATTACAGAACGTCAGGTGAGGTTGGATAATGGCATAGTCCAAGTCACATTATCAAAACCAGATGGCTTAGTGACCGGAATTCGATTCAATGGAGTCGACAACTTGCTCGAAGTTCTCAACGATGAATCTAATCGAGGGTACTGGGACCTCGTGTGGAATCCATCAGCCTCAACAACTGGATCGTTTGATGTGATAAAGGCTACAGGTTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACAAGAAAATGGGATCTGTCTCTCGAAGGAAAGCTTGTGCCTTTAGAAATTGATAAAAGGTTTATAATGCTTCGGGGTTCGCCTGGATTCTATTCTTATGCTATTTACCAACACTTGAAAGAATGGCCTGCTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCGTTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCGCTTCCAGATGACCGGTCTCCGCCGAGAGGCCGAGCCCTGGCGTATCCGGAGGCTGTCCTGCTCGTCGACCCCGTTGAACCGGAGCTCCAGGGAGAGGTGGATGACAAATATCAATATTCATGCGACAACAAAGACAGCGGCGTCCATGGATGGATATCCACCGACCCGCCAGTCGGGTTCTGGCTAATCACCCCCAGCAATGAGTTCCGGTCCGGTGGACCCGTTAAACAGAACCTGACTTCACACGTCGGCCCAACCACCCTTGCTGTTTTTATTAGCGCCCATTACGCGGGAGAGGATCTCGTGCCGAAAATCGGAGCCGGCGAGGAGTGGAAGAAAGTTTTCGGTCCTGTGTGTGTCTATCTCAACTCCACTTACGATTCCAACGACGCACTTCAGCTATGGGAAGATGCCAAAGCACAGGCGACGATTGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGCCAAACCAACGGGGCAATATCAGTGGTAGACTCTTAGTTAAAGATAGCTACGTTAGTGAAGACTCCATACCAGCAAACGGTGCGTTTGTTGGGTTAGCTCCACCAGGAGACGTAGGATCATGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGATATTTTTTCATCGACGGCGTAAGGCCCGGCGACTACAATCTGTATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTTACGATGCTCTCATCAACATTACAGAAGGTAGTCAGATAGACGTGGGTGACATAACATACGAGCCTCCAAGAGAAGGGGATACACTATGGGAAATTGGAGTCGCCGATCGCTCAGCAGCGGAATTCTTTGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCCGATAAGTTTCGGCAGTACGGTCTGTGGGAAAGATACAGTGAATTGTATCCCGACGCAGACTTGGTATATACCGTTGGCGTCAGTGATTACACTAAGGATTGGTTCTTCGCTCAGGTCCCCAGGAAGACAGATAGTGGAACATTCAAGGGAACAACATGGCAAGTGAAGTTCAAGCTGGATAACGTGGACAACAAAGCAACTTACAAGCTTCGGATCGCATTGGCCTCCGCTTCTCTCGCGGAATTGCAGGTTGGAGTAAATGACCCAAAAGCAAAGCCGGTGTTCTCGAGTGGACTGATCGGAAGGGACAATTCGATCGCCAGGCACGGCATTCACGGGCTGCACTGGCTTTACAACGTGGATATTCCGGGCAACCGGCTGGTTACCGGCGACAATACCATCTTCTTCACACAGCCCAGAAGCACAGGCCCTTTCCAAGCCATTATGTACGATTACATTCGTCTGGAAGCTCCTCTACCTCCATCCTCCGCCCGTAAGACTTTGGAATAA | 1929 | 49.2 | MPPLGVQLFITERQVRLDNGIVQVTLSKPDGLVTGIRFNGVDNLLEVLNDESNRGYWDLVWNPSASTTGSFDVIKATGFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSPGFYSYAIYQHLKEWPAFNLGETRLAFKLRKDKFRYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPVEPELQGEVDDKYQYSCDNKDSGVHGWISTDPPVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEEWKKVFGPVCVYLNSTYDSNDALQLWEDAKAQATIEVQSWPYSFPASEDFPKPNQRGNISGRLLVKDSYVSEDSIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADESGYFFIDGVRPGDYNLYAWVPGFIGDYRYDALINITEGSQIDVGDITYEPPREGDTLWEIGVADRSAAEFFVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVSDYTKDWFFAQVPRKTDSGTFKGTTWQVKFKLDNVDNKATYKLRIALASASLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLHWLYNVDIPGNRLVTGDNTIFFTQPRSTGPFQAIMYDYIRLEAPLPPSSARKTLE | 642 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 33627745 | 33633930 | - | Maker00033937 | Lcy13g1498 | 651803 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g1498 | 642 | Pfam | Rhamnogalacturonate lyase family | 6 | 201 | IPR010325 | - | |
Lcy13g1498 | 642 | FunFam | Rhamnogalacturonate lyase B | 329 | 428 | - | - | |
Lcy13g1498 | 642 | SUPERFAMILY | Starch-binding domain-like | 330 | 429 | IPR013784 | GO:0030246(InterPro) | |
Lcy13g1498 | 642 | Pfam | Polysaccharide lyase family 4, domain II | 355 | 427 | IPR029413 | - | |
Lcy13g1498 | 642 | SUPERFAMILY | Galactose-binding domain-like | 439 | 629 | IPR008979 | - | |
Lcy13g1498 | 642 | SUPERFAMILY | Galactose mutarotase-like | 20 | 291 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Lcy13g1498 | 642 | CDD | RGL4_N | 13 | 293 | - | - | |
Lcy13g1498 | 642 | Gene3D | - | 7 | 294 | IPR014718 | GO:0030246(InterPro) | |
Lcy13g1498 | 642 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 4 | 631 | IPR051850 | - | |
Lcy13g1498 | 642 | Pfam | Polysaccharide lyase family 4, domain III | 441 | 628 | IPR029411 | - | |
Lcy13g1498 | 642 | CDD | RGL4_M | 332 | 431 | IPR029413 | - | |
Lcy13g1498 | 642 | Gene3D | - | 438 | 629 | - | - | |
Lcy13g1498 | 642 | Gene3D | - | 330 | 428 | - | - | |
Lcy13g1498 | 642 | CDD | RGL4_C | 443 | 629 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1498 | Lcy-Chr13:33627745 | Lcy9g1668 | Lcy-Chr9:41877014 | 2.28E-290 | dispersed | |
Lcy1g0848 | Lcy-Chr1:7246762 | Lcy13g1498 | Lcy-Chr13:33627745 | 2.12E-260 | wgd | |
Lcy13g1498 | Lcy-Chr13:33627745 | Lcy9g1667 | Lcy-Chr9:41867094 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g1498 | K18195 | - | csv:101215720 | 1204.5 |