Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1498 ATGCCTCCACTGGGTGTGCAACTCTTCATTACAGAACGTCAGGTGAGGTTGGATAATGGCATAGTCCAAGTCACATTATCAAAACCAGATGGCTTAGTGACCGGAATTCGATTCAATGGAGTCGACAACTTGCTCGAAGTTCTCAACGATGAATCTAATCGAGGGTACTGGGACCTCGTGTGGAATCCATCAGCCTCAACAACTGGATCGTTTGATGTGATAAAGGCTACAGGTTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACAAGAAAATGGGATCTGTCTCTCGAAGGAAAGCTTGTGCCTTTAGAAATTGATAAAAGGTTTATAATGCTTCGGGGTTCGCCTGGATTCTATTCTTATGCTATTTACCAACACTTGAAAGAATGGCCTGCTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCGTTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCGCTTCCAGATGACCGGTCTCCGCCGAGAGGCCGAGCCCTGGCGTATCCGGAGGCTGTCCTGCTCGTCGACCCCGTTGAACCGGAGCTCCAGGGAGAGGTGGATGACAAATATCAATATTCATGCGACAACAAAGACAGCGGCGTCCATGGATGGATATCCACCGACCCGCCAGTCGGGTTCTGGCTAATCACCCCCAGCAATGAGTTCCGGTCCGGTGGACCCGTTAAACAGAACCTGACTTCACACGTCGGCCCAACCACCCTTGCTGTTTTTATTAGCGCCCATTACGCGGGAGAGGATCTCGTGCCGAAAATCGGAGCCGGCGAGGAGTGGAAGAAAGTTTTCGGTCCTGTGTGTGTCTATCTCAACTCCACTTACGATTCCAACGACGCACTTCAGCTATGGGAAGATGCCAAAGCACAGGCGACGATTGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGCCAAACCAACGGGGCAATATCAGTGGTAGACTCTTAGTTAAAGATAGCTACGTTAGTGAAGACTCCATACCAGCAAACGGTGCGTTTGTTGGGTTAGCTCCACCAGGAGACGTAGGATCATGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGATATTTTTTCATCGACGGCGTAAGGCCCGGCGACTACAATCTGTATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTTACGATGCTCTCATCAACATTACAGAAGGTAGTCAGATAGACGTGGGTGACATAACATACGAGCCTCCAAGAGAAGGGGATACACTATGGGAAATTGGAGTCGCCGATCGCTCAGCAGCGGAATTCTTTGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCCGATAAGTTTCGGCAGTACGGTCTGTGGGAAAGATACAGTGAATTGTATCCCGACGCAGACTTGGTATATACCGTTGGCGTCAGTGATTACACTAAGGATTGGTTCTTCGCTCAGGTCCCCAGGAAGACAGATAGTGGAACATTCAAGGGAACAACATGGCAAGTGAAGTTCAAGCTGGATAACGTGGACAACAAAGCAACTTACAAGCTTCGGATCGCATTGGCCTCCGCTTCTCTCGCGGAATTGCAGGTTGGAGTAAATGACCCAAAAGCAAAGCCGGTGTTCTCGAGTGGACTGATCGGAAGGGACAATTCGATCGCCAGGCACGGCATTCACGGGCTGCACTGGCTTTACAACGTGGATATTCCGGGCAACCGGCTGGTTACCGGCGACAATACCATCTTCTTCACACAGCCCAGAAGCACAGGCCCTTTCCAAGCCATTATGTACGATTACATTCGTCTGGAAGCTCCTCTACCTCCATCCTCCGCCCGTAAGACTTTGGAATAA 1929 49.2 MPPLGVQLFITERQVRLDNGIVQVTLSKPDGLVTGIRFNGVDNLLEVLNDESNRGYWDLVWNPSASTTGSFDVIKATGFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSPGFYSYAIYQHLKEWPAFNLGETRLAFKLRKDKFRYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPVEPELQGEVDDKYQYSCDNKDSGVHGWISTDPPVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEEWKKVFGPVCVYLNSTYDSNDALQLWEDAKAQATIEVQSWPYSFPASEDFPKPNQRGNISGRLLVKDSYVSEDSIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADESGYFFIDGVRPGDYNLYAWVPGFIGDYRYDALINITEGSQIDVGDITYEPPREGDTLWEIGVADRSAAEFFVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVSDYTKDWFFAQVPRKTDSGTFKGTTWQVKFKLDNVDNKATYKLRIALASASLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLHWLYNVDIPGNRLVTGDNTIFFTQPRSTGPFQAIMYDYIRLEAPLPPSSARKTLE 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33627745 33633930 - Maker00033937 Lcy13g1498 651803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1498 642 Pfam Rhamnogalacturonate lyase family 6 201 IPR010325 -
Lcy13g1498 642 FunFam Rhamnogalacturonate lyase B 329 428 - -
Lcy13g1498 642 SUPERFAMILY Starch-binding domain-like 330 429 IPR013784 GO:0030246(InterPro)
Lcy13g1498 642 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Lcy13g1498 642 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Lcy13g1498 642 SUPERFAMILY Galactose mutarotase-like 20 291 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Lcy13g1498 642 CDD RGL4_N 13 293 - -
Lcy13g1498 642 Gene3D - 7 294 IPR014718 GO:0030246(InterPro)
Lcy13g1498 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 631 IPR051850 -
Lcy13g1498 642 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Lcy13g1498 642 CDD RGL4_M 332 431 IPR029413 -
Lcy13g1498 642 Gene3D - 438 629 - -
Lcy13g1498 642 Gene3D - 330 428 - -
Lcy13g1498 642 CDD RGL4_C 443 629 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1498 Lcy-Chr13:33627745 Lcy9g1668 Lcy-Chr9:41877014 2.28E-290 dispersed
Lcy1g0848 Lcy-Chr1:7246762 Lcy13g1498 Lcy-Chr13:33627745 2.12E-260 wgd
Lcy13g1498 Lcy-Chr13:33627745 Lcy9g1667 Lcy-Chr9:41867094 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1498 K18195 - csv:101215720 1204.5