Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1500 ATGGCGCCGGGTTTTGACCTTGCTGTTTCGAACCTTTTATGCGCTGAAGAGAATTGCATTTTCGATAATCACGATGATGATGATGAAACAGTAGTTGAGGAGTTTGTGGTGGCTCCTTATTTTCTTAGAAGTAGTGGGTCTCAGAATCGTCGCCATCGGAGCCTCCACGGCGGCGGTTGCGGCGGTGATGGGTTGCCGTTTTTGAGCGATGAATGTTTGATTGGAATGGTTGAGAAGGAAACCCAGCACTTGCCTGTTGATGGGTATCTCGTGAAGTTGCAGAACGGCGAGTTGGATGTTGGAGCCAGAAAAGAGGCCGTCGATTGGATTGAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTAGCCGTAAACTACTTGGATCGTTTCCTCTCCGCTTACGATCTACCCAAAGGCAAAGCTTGGACAATGCAGTTGCTGGCTGTGGCATGTATGTCCCTTGCAGCCAAATTGGAGGAGACTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAGTTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACCACATTGGGGTGGAGAATGCAAGCAGTTACCCCTTTCTCGTTTATCGATCATTACCTCCACAAGATTCACGACGACGAACTCGCTGTCAAAATGTCGATCACCCGATCGATACACCTACTCTTGACCATAATACAAGGGATTGACTTCTTGGAATTCAAACCTTCTGAAATTGCAGCAGCTGTGGCAATCTCAGTAGCTGGAGAAGCTCAAGCAGTGGACCCTGAAAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGCATTAAACTAATCAACGACATGTCGTTAGTCTGCGGGAGAGTGTCGATGTCGGAGCCCCGGAGCCCGAGCGGGGTGTTGGACGTGACGTGCTTGAGCTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCACATCATAACAGCTCAGATGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG 1074 47.39 MAPGFDLAVSNLLCAEENCIFDNHDDDDETVVEEFVVAPYFLRSSGSQNRRHRSLHGGGCGGDGLPFLSDECLIGMVEKETQHLPVDGYLVKLQNGELDVGARKEAVDWIEKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLHKIHDDELAVKMSITRSIHLLLTIIQGIDFLEFKPSEIAAAVAISVAGEAQAVDPERAIPLLIQQLQMERVLKCIKLINDMSLVCGRVSMSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHNSSDATKRRRLNRPCEVEL 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33656000 33659161 + Maker00034047 Lcy13g1500 651805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1500 357 SMART cyclin_7 108 196 IPR013763 -
Lcy13g1500 357 MobiDBLite consensus disorder prediction 331 351 - -
Lcy13g1500 357 SMART Cyclin_C_2 205 323 IPR004367 -
Lcy13g1500 357 Gene3D - 76 289 - -
Lcy13g1500 357 SUPERFAMILY Cyclin-like 68 202 IPR036915 -
Lcy13g1500 357 CDD CYCLIN_AtCycD-like_rpt1 102 200 - -
Lcy13g1500 357 SUPERFAMILY Cyclin-like 188 300 IPR036915 -
Lcy13g1500 357 Pfam Cyclin, C-terminal domain 205 297 IPR004367 -
Lcy13g1500 357 PANTHER CYCLINS 79 294 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy13g1500 357 CDD CYCLIN_AtCycD-like_rpt2 205 293 - -
Lcy13g1500 357 FunFam D2/4-type cyclin 86 201 - -
Lcy13g1500 357 Gene3D - 86 203 - -
Lcy13g1500 357 FunFam D6-type cyclin 202 291 - -
Lcy13g1500 357 Pfam Cyclin, N-terminal domain 76 202 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1500 Lcy-Chr13:33656000 Lcy6g0441 Lcy-Chr6:4117844 5.68E-53 dispersed
Lcy13g2314 Lcy-Chr13:42014610 Lcy13g1500 Lcy-Chr13:33656000 2.74E-33 transposed
Lcy7g0207 Lcy-Chr7:1819009 Lcy13g1500 Lcy-Chr13:33656000 1.24E-52 transposed
Lcy1g0824 Lcy-Chr1:7022381 Lcy13g1500 Lcy-Chr13:33656000 1.15E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1500 K18810 - csv:101216206 610.142