Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1503 ATGGATTTCTTTTCTCTCTGTACTGCAGACTCTGCCATAGCCACCTGCGTCTGCCATCGCAAAACCAAACCAAACAAGCCTTTCAAAATCAGGCAATTCCCCTATTCCGACCTCGTCTCCTCCACGAATGCCTTCTCCGCCGACTGTTTCTTGGGCAAAGGCAGCCACGGCAGCGTCTACAAGGCCCTTCTCGACGGCGGCAACCTCCTCGCCGCCGTCAAACGAACCAAATCCCCAAACCCATCTTCTAATTTTCACCACAATCATGACTACCGATGTGACAATTCCTGCCAATTCGCTAACAACACTCCCGCCGAGAACGAAATCGAGATTCTCTCGCGGCTTCGGAATCCGAGAATCGTCAATCTCATTGGCTTTTGCGCCGATTCCAAACAGGAGAAGTTGCTTGTCGTTGAGTTCATGCCCAATGGCTCTCTTTACGATCTGCTCCACTCGCGATCTCGACCGCCCGGTTGGACTACACGGGTCCGCTTCGCCTTGCAACTGGCCAAGGCGGTTCGGGCTCTCCACACCTCCAACCCGCCGGTTATTCATAGGGATATCAAGTCGTCCAACGTTTTGATCGACGGTAACTTCAACGCGCGCCTTGGGGATTTCGGGTTGGCGTTGAGAGGACACGTGGAGGACGTGCGCGTGAGATGCACGCCCCCGGCTGGCACGTTGGGTTATCTCGACCCCGGGTATCTCGCACCGGCCGATTTGAGCCTGAAGAGTGACGTGTTCAGTTTTGGGATTTTGCTTTTGGAAATCATCACCGGCCGGAATGCTATCGACGTTCACCACAGTCCACCGTCGGTCGTCGACTGGGCGGTGCCGATGATCAAACACGGCGACTTCGACGGGTTGTGTGACCCACGAATCGGGTCTCCGGCTGACCCGGCGGTGACCCGGTATATGGCGGTTCTGGCCTCCAAGTGTGTCCGGTCCACTGTGCAGAAGAGGCCGGATATGGCGGAGGTGGTGGAGTGCTTGAAGGTAGCGAAGAGGAAAGTGCACTCGCCGCCGATATGGAATAACTTCAGACGGCGGGAACGCCACGTGGAGAATCTCCAGCCGTTGATCTTGAACCGGGATGAACCCGACGGTAATGACGAACCGGTGAGGGTTTCTCGAATCGGAAGCCGGCGGAATCGGAAAGTATCCAGCGTTTCGAGTACAGAGTATGGAATCAAGACGATTGGTTCGAGCAATGGGCGTGTGGTGAGATCGAGATCAACGGGTTCGATGAACGATATGAAATTTGGACAAATGAATTCAAATGTGGGCGGGAATTATTACTCGTCGTTGGGTGGGCGGCGGAAGCACGGCGGAGTTGCAGTGAAAATCCCGTCGATGAAACTCAGCAAATCGAGGTCGGTGGGAGTGTCGGAGAATCCGAAGTTTGTGGAATTGAATCGGAGGGCGGCGGAAATTGAAATGTCGAAATTGACGATCGACTCTGAGAAAAAGATGCTTGAGAAACCGTTGTTCCAAAAGTAG 1500 54.27 MDFFSLCTADSAIATCVCHRKTKPNKPFKIRQFPYSDLVSSTNAFSADCFLGKGSHGSVYKALLDGGNLLAAVKRTKSPNPSSNFHHNHDYRCDNSCQFANNTPAENEIEILSRLRNPRIVNLIGFCADSKQEKLLVVEFMPNGSLYDLLHSRSRPPGWTTRVRFALQLAKAVRALHTSNPPVIHRDIKSSNVLIDGNFNARLGDFGLALRGHVEDVRVRCTPPAGTLGYLDPGYLAPADLSLKSDVFSFGILLLEIITGRNAIDVHHSPPSVVDWAVPMIKHGDFDGLCDPRIGSPADPAVTRYMAVLASKCVRSTVQKRPDMAEVVECLKVAKRKVHSPPIWNNFRRRERHVENLQPLILNRDEPDGNDEPVRVSRIGSRRNRKVSSVSSTEYGIKTIGSSNGRVVRSRSTGSMNDMKFGQMNSNVGGNYYSSLGGRRKHGGVAVKIPSMKLSKSRSVGVSENPKFVELNRRAAEIEMSKLTIDSEKKMLEKPLFQK 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33716892 33718391 + Maker00034209 Lcy13g1503 651808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1503 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1503 499 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 24 338 IPR044815 GO:0004674(InterPro)
Lcy13g1503 499 Pfam Protein kinase domain 50 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1503 499 Gene3D Transferase(Phosphotransferase) domain 1 141 346 - -
Lcy13g1503 499 SMART serkin_6 45 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1503 499 SUPERFAMILY Protein kinase-like (PK-like) 26 331 IPR011009 -
Lcy13g1503 499 ProSiteProfiles Protein kinase domain profile. 45 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1503 499 Gene3D Phosphorylase Kinase; domain 1 29 140 - -
Lcy13g1503 499 FunFam Serine/threonine-protein kinase-like protein 141 344 - -
Lcy13g1503 499 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1503 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0425 Lcy-Chr12:5181602 Lcy13g1503 Lcy-Chr13:33716892 9.32E-116 dispersed
Lcy13g1503 Lcy-Chr13:33716892 Lcy7g0019 Lcy-Chr7:206670 3.69E-77 dispersed
Lcy13g1503 Lcy-Chr13:33716892 Lcy11g1153 Lcy-Chr11:33881218 1.50E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g480 . . Bda01g00901 . . . . . . . . . . . . . . Bhi04g00811 . . . . . Lcy13g1503 Cla08g01146 . . . . . . . . Cone17ag1191 . . . . Cme03g01826 . . Bda11g00788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01004 Csa02g02188 Chy03g01329 .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65580 None None None None Lcy PK